NM_001393500.2(TOMT):c.80T>C (p.Leu27Pro) AND Autosomal recessive nonsyndromic hearing loss 63

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: May 13, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003131511.3

Allele description [Variation Report for NM_001393500.2(TOMT):c.80T>C (p.Leu27Pro)]

NM_001393500.2(TOMT):c.80T>C (p.Leu27Pro)

Genes:

LRTOMT:leucine rich transmembrane and O-methyltransferase domain containing [Gene - OMIM - HGNC]
TOMT:transmembrane O-methyltransferase [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

11q13.4

Genomic location:

Preferred name:

NM_001393500.2(TOMT):c.80T>C (p.Leu27Pro)

HGVS:

NC_000011.10:g.72106031T>C
NG_021423.1:g.30696T>C
NM_001145308.5:c.179T>C
NM_001145309.4:c.179T>C
NM_001145310.4:c.84-25T>C
NM_001393500.2:c.80T>CMANE SELECT
NP_001138780.1:p.Leu60Pro
NP_001138780.1:p.Leu60Pro
NP_001138781.1:p.Leu60Pro
NP_001380429.1:p.Leu27Pro
NC_000011.9:g.71817077T>C
NM_001145308.4:c.179T>C

Protein change:

L27P

Molecular consequence:

NM_001145310.4:c.84-25T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001145308.5:c.179T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001145309.4:c.179T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001393500.2:c.80T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Autosomal recessive nonsyndromic hearing loss 63
Synonyms:: Deafness, autosomal recessive 63
Identifiers:: MONDO: MONDO:0012670; MedGen: C1969621; Orphanet: 90636; OMIM: 611451

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003812780	Revvity Omics, Revvity	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (May 13, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003812780

Revvity Omics, Revvity

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(May 13, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Revvity Omics, Revvity, SCV003812780.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Mar 16, 2024

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