NM_001099922.3(ALG13):c.50T>A (p.Ile17Asn) AND See cases

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Dec 21, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003156121.1

Allele description [Variation Report for NM_001099922.3(ALG13):c.50T>A (p.Ile17Asn)]

NM_001099922.3(ALG13):c.50T>A (p.Ile17Asn)

Gene:

ALG13:ALG13 UDP-N-acetylglucosaminyltransferase subunit [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xq23

Genomic location:

Preferred name:

NM_001099922.3(ALG13):c.50T>A (p.Ile17Asn)

HGVS:

NC_000023.11:g.111681268T>A
NG_016238.1:g.5151T>A
NM_001039210.5:c.50T>A
NM_001099922.3:c.50T>AMANE SELECT
NM_001168385.3:c.50T>A
NM_001257230.2:c.-159T>A
NM_001257231.2:c.-251T>A
NM_001257234.2:c.-284T>A
NM_001257235.3:c.-284T>A
NM_001257237.2:c.-388T>A
NM_001257240.3:c.-388T>A
NM_001257241.3:c.-251T>A
NM_001324290.2:c.50T>A
NM_001324291.2:c.-159T>A
NM_001324292.2:c.50T>A
NM_001324293.1:c.-388T>A
NM_018466.6:c.50T>A
NP_001034299.3:p.Ile17Asn
NP_001093392.1:p.Ile17Asn
NP_001161857.1:p.Ile17Asn
NP_001311219.1:p.Ile17Asn
NP_001311221.1:p.Ile17Asn
NP_060936.1:p.Ile17Asn
NC_000023.10:g.110924496T>A
NM_001099922.2:c.50T>A
NR_033125.3:n.99T>A
NR_136735.2:n.99T>A
NR_148693.2:n.99T>A

Protein change:

I17N

Links:

dbSNP: rs1569508922

NCBI 1000 Genomes Browser:

rs1569508922

Molecular consequence:

NM_001257230.2:c.-159T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001257231.2:c.-251T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001257234.2:c.-284T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001257235.3:c.-284T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001257237.2:c.-388T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001257240.3:c.-388T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001257241.3:c.-251T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001324291.2:c.-159T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001324293.1:c.-388T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001039210.5:c.50T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001099922.3:c.50T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001168385.3:c.50T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001324290.2:c.50T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001324292.2:c.50T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_018466.6:c.50T>A - missense variant - [Sequence Ontology: SO:0001583]
NR_033125.3:n.99T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_136735.2:n.99T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148693.2:n.99T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: See cases [See the Variation display for details]
Identifiers:

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003845250	Center for Personalized Medicine, Children's Hospital Los Angeles	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Dec 21, 2022)	de novo	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003845250

Center for Personalized Medicine, Children's Hospital Los Angeles

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Dec 21, 2022)

de novo

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	de novo	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Center for Personalized Medicine, Children's Hospital Los Angeles, SCV003845250.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	de novo	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 8, 2024

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