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NM_001145715.3(KPNA7):c.607C>T (p.Leu203Phe) AND Oocyte/zygote/embryo maturation arrest 17

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 10, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003169119.1

Allele description [Variation Report for NM_001145715.3(KPNA7):c.607C>T (p.Leu203Phe)]

NM_001145715.3(KPNA7):c.607C>T (p.Leu203Phe)

Gene:
KPNA7:karyopherin subunit alpha 7 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q22.1
Genomic location:
Preferred name:
NM_001145715.3(KPNA7):c.607C>T (p.Leu203Phe)
HGVS:
  • NC_000007.14:g.99193048G>A
  • NG_051213.1:g.31370C>T
  • NM_001145715.3:c.607C>TMANE SELECT
  • NP_001139187.1:p.Leu203Phe
  • NC_000007.13:g.98790671G>A
  • NC_000007.13:g.98790671G>A
  • NM_001145715.1:c.607C>T
Protein change:
L203F; LEU203PHE
Links:
OMIM: 614107.0003; dbSNP: rs146752157
NCBI 1000 Genomes Browser:
rs146752157
Molecular consequence:
  • NM_001145715.3:c.607C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Oocyte/zygote/embryo maturation arrest 17 (OZEMA17)
Identifiers:
MONDO: MONDO:0957220; MedGen: C5830418; OMIM: 620319

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003915421OMIM
no assertion criteria provided
Pathogenic
(Apr 10, 2023)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Karyopherin α deficiency contributes to human preimplantation embryo arrest.

Wang W, Miyamoto Y, Chen B, Shi J, Diao F, Zheng W, Li Q, Yu L, Li L, Xu Y, Wu L, Mao X, Fu J, Li B, Yan Z, Shi R, Xue X, Mu J, Zhang Z, Wu T, Zhao L, Wang W, et al.

J Clin Invest. 2023 Jan 17;133(2). doi:pii: e159951. 10.1172/JCI159951.

PubMed [citation]
PMID:
36647821
PMCID:
PMC9843055

Details of each submission

From OMIM, SCV003915421.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 6 unrelated Chinese women (families 1, 2, 4, 5, 7, and 10) with preimplantation embryo arrest (OZEMA17; 620319), Wang et al. (2023) identified homozygosity for a c.607C-T transition (c.607C-T, NM_001145715.3) in the KPNA7 gene, resulting in a leu203-to-pro (L203P) substitution. Another 3 women with the same phenotype were compound heterozygous for L203P and another mutation in KPNA7: the proband in family 3 had a c.635C-T transition, resulting in a pro212-to-leu (P212L; 614107.0004); the proband in family 6 had a c.523C-A transversion, resulting in a gln175-to-lys (Q175K; 614107.0005); and the proband in family 9 had a 7-bp deletion (c.1350_1356delGTGTCTT; 614107.0006), causing a frameshift predicted to result in a premature termination codon (Cys451Ter; C451X). The mutations segregated fully with disease in the 8 families for which relatives' DNA was available, and none was found in 2,813 controls. The Q175K variant and the 7-bp deletion were not found in the ExAC or gnomAD databases, but the L203F variant was present at minor allele frequencies of 1.41 X 10(-4) and 3.21 x 10(-4), respectively, and the P212L at MAFs of 4.75 x 10(-5) and 6.02 x 10(-5). Western blot of transfected HEK293T cells showed that all mutant protein levels were significantly lower than wildtype KPNA7. KPNA7-SV40TNLS interaction was strongly disrupted by the missense variants, and mutant KPNA7 showed significantly reduced SV40TNLS protein transport activity compared to wildtype KPNA7. In addition, GST-RSL1D1 (615874)-GFP pulldown and immunoprecipitation experiments demonstrated impaired interaction between the mutant proteins and the KPNA7 substrate RSL1D1.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 20, 2024