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NM_003200.5(TCF3):c.307G>A (p.Gly103Ser) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 30, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003224490.1

Allele description [Variation Report for NM_003200.5(TCF3):c.307G>A (p.Gly103Ser)]

NM_003200.5(TCF3):c.307G>A (p.Gly103Ser)

Gene:
TCF3:transcription factor 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.3
Genomic location:
Preferred name:
NM_003200.5(TCF3):c.307G>A (p.Gly103Ser)
HGVS:
  • NC_000019.10:g.1627418C>T
  • NG_029953.2:g.30129G>A
  • NM_001136139.4:c.307G>A
  • NM_001351778.2:c.307G>A
  • NM_001351779.2:c.307G>A
  • NM_003200.5:c.307G>AMANE SELECT
  • NP_001129611.1:p.Gly103Ser
  • NP_001338707.1:p.Gly103Ser
  • NP_001338708.1:p.Gly103Ser
  • NP_003191.1:p.Gly103Ser
  • LRG_1325t1:c.307G>A
  • LRG_1325t2:c.307G>A
  • LRG_1325:g.30129G>A
  • LRG_1325p1:p.Gly103Ser
  • LRG_1325p2:p.Gly103Ser
  • NC_000019.9:g.1627417C>T
  • NG_029953.1:g.29912G>A
  • NM_003200.3:c.307G>A
Protein change:
G103S
Links:
dbSNP: rs201841190
NCBI 1000 Genomes Browser:
rs201841190
Molecular consequence:
  • NM_001136139.4:c.307G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351778.2:c.307G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351779.2:c.307G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003200.5:c.307G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Agammaglobulinemia 8, autosomal dominant (AGM8A)
Synonyms:
AGAMMAGLOBULINEMIA, AUTOSOMAL DOMINANT, DUE TO TCF3 DEFECT; AGAMMAGLOBULINEMIA 8A, AUTOSOMAL DOMINANT
Identifiers:
MONDO: MONDO:0014840; MedGen: C4310786; OMIM: 616941
Name:
Agammaglobulinemia 8b, autosomal recessive
Synonyms:
AGAMMAGLOBULINEMIA, AUTOSOMAL RECESSIVE, DUE TO TCF3 DEFECT
Identifiers:
MONDO: MONDO:0859234; MedGen: C5676958; OMIM: 619824

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003920540Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Mar 30, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago, SCV003920540.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

TCF3 NM_003200.3 exon 6 p.Gly103Ser (c.307G>A): This variant has not been reported in the literature but is present in 0.2% (59/19784) of East Asian alleles in the Genome Aggregation Database (https://gnomad.broadinstitute.org/variant/19-1627417-C-T?dataset=gnomad_r2_1). This variant amino acid Serine (Ser) is present in >20 species and is not well conserved among evolutionarily distant species; this suggests that this variant may not impact the protein. Additional computational prediction tools do not suggest an impact. In summary, data on this variant is insufficient for disease classification. Therefore, the clinical significance of this variant is uncertain.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 20, 2024