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NM_015058.2(VWA8):c.947A>G (p.Asp316Gly) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 14, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003229577.2

Allele description [Variation Report for NM_015058.2(VWA8):c.947A>G (p.Asp316Gly)]

NM_015058.2(VWA8):c.947A>G (p.Asp316Gly)

Gene:
VWA8:von Willebrand factor A domain containing 8 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q14.11
Genomic location:
Preferred name:
NM_015058.2(VWA8):c.947A>G (p.Asp316Gly)
HGVS:
  • NC_000013.11:g.41885948T>C
  • NM_001009814.2:c.947A>G
  • NM_015058.2:c.947A>GMANE SELECT
  • NP_001009814.1:p.Asp316Gly
  • NP_055873.1:p.Asp316Gly
  • NC_000013.10:g.42460084T>C
  • NM_015058.1:c.947A>G
Protein change:
D316G; ASP316GLY
Links:
OMIM: 617509.0001
Molecular consequence:
  • NM_001009814.2:c.947A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015058.2:c.947A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003926602OMIM
no assertion criteria provided
Uncertain significance
(Dec 14, 2023)
germlineliterature only

Umair, M., Farooq Khan, M., Aldrees, M., Nashabat, M., Alhamoudi, K. M., Bilal, M., Alyafee, Y., Al Tuwaijri, A., Aldarwish, M., Al-Rumayyan, A., Alkhalaf, H., Wadaan, M. A. M., Alfadhel, M. Mutated VWA8 is associated with developmental delay, microcephaly, and scoliosis and plays a novel role in early development and skeletal morphogenesis in zebrafish. Front. Cell Dev. Biol. 9: 736960, 2021.

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Details of each submission

From OMIM, SCV003926602.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature onlynot provided

Description

This variant is classified as a variant of unknown significance because its contribution to an intellectual developmental disorder with poor growth and scoliosis has not been confirmed.

In 4 affected members of a highly consanguineous Saudi family with an intellectual developmental disorder with poor growth and scoliosis, Umair et al. (2021) identified a homozygous c.947A-G transition (c.947A-G, NM_015058.1) in exon 8 of the VWA8 gene, resulting in an asp316-to-gly (D316G) substitution at a highly conserved residue. The variant, which was found by whole-exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family. It was present 5 times in heterozygous state (5 of 125,748 exomes) but was not present in homozygous state in the gnomAD database. Functional studies of the variant and studies of patient cells were not performed, but molecular modeling predicted that the variant would destabilize VWA8 protein structure. The variant was classified as a variant of unknown significance according to ACMG criteria. The patients, who ranged from 8 to 19 years of age, had global developmental delay with mild to moderately impaired intellectual development, poor or absent speech, and poor overall growth. The female proband could not walk and was wheelchair-bound with central hypotonia, spastic diplegia, contractures of the lower limbs, severe scoliosis, and fused ribs (spondylocostal dysostosis). She also had a large atrial septal defect. Her 3 brothers were similarly affected (although without heart defects); 1 had clubfoot. All patients had astigmatism, and 2 had exotropia and amblyopia. Brain imaging was normal in all patients.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023