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NM_022893.4(BCL11A):c.1486G>T (p.Glu496Ter) AND Dias-Logan syndrome

Germline classification:
Pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003307366.1

Allele description [Variation Report for NM_022893.4(BCL11A):c.1486G>T (p.Glu496Ter)]

NM_022893.4(BCL11A):c.1486G>T (p.Glu496Ter)

Gene:
BCL11A:BCL11 transcription factor A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p16.1
Genomic location:
Preferred name:
NM_022893.4(BCL11A):c.1486G>T (p.Glu496Ter)
HGVS:
  • NC_000002.12:g.60461426C>A
  • NG_011968.1:g.97073G>T
  • NM_001363864.1:c.1384G>T
  • NM_001365609.1:c.1384G>T
  • NM_001405708.1:c.1486G>T
  • NM_001405709.1:c.1486G>T
  • NM_001405710.1:c.1486G>T
  • NM_001405711.1:c.1384G>T
  • NM_001405712.1:c.1384G>T
  • NM_001405713.1:c.1330G>T
  • NM_001405714.1:c.1330G>T
  • NM_001405715.1:c.1330G>T
  • NM_001405716.1:c.1330G>T
  • NM_001405717.1:c.1228G>T
  • NM_001405718.1:c.1228G>T
  • NM_001405719.1:c.1384G>T
  • NM_001405720.1:c.1153G>T
  • NM_001405721.1:c.1153G>T
  • NM_001405722.1:c.1330G>T
  • NM_001405723.1:c.1330G>T
  • NM_001405724.1:c.1228G>T
  • NM_001405725.1:c.1030G>T
  • NM_001405726.1:c.1030G>T
  • NM_001405727.1:c.1030G>T
  • NM_001405728.1:c.1030G>T
  • NM_001405729.1:c.793G>T
  • NM_001405730.1:c.949G>T
  • NM_001405731.1:c.493G>T
  • NM_001405732.1:c.630+856G>T
  • NM_001405733.1:c.528+856G>T
  • NM_001405734.1:c.474+856G>T
  • NM_001405735.1:c.474+856G>T
  • NM_001405736.1:c.372+856G>T
  • NM_018014.4:c.1486G>T
  • NM_022893.4:c.1486G>TMANE SELECT
  • NM_138559.2:c.630+856G>T
  • NP_001350793.1:p.Glu462Ter
  • NP_001352538.1:p.Glu462Ter
  • NP_001392637.1:p.Glu496Ter
  • NP_001392638.1:p.Glu496Ter
  • NP_001392639.1:p.Glu496Ter
  • NP_001392640.1:p.Glu462Ter
  • NP_001392641.1:p.Glu462Ter
  • NP_001392642.1:p.Glu444Ter
  • NP_001392643.1:p.Glu444Ter
  • NP_001392644.1:p.Glu444Ter
  • NP_001392645.1:p.Glu444Ter
  • NP_001392646.1:p.Glu410Ter
  • NP_001392647.1:p.Glu410Ter
  • NP_001392648.1:p.Glu462Ter
  • NP_001392649.1:p.Glu385Ter
  • NP_001392650.1:p.Glu385Ter
  • NP_001392651.1:p.Glu444Ter
  • NP_001392652.1:p.Glu444Ter
  • NP_001392653.1:p.Glu410Ter
  • NP_001392654.1:p.Glu344Ter
  • NP_001392655.1:p.Glu344Ter
  • NP_001392656.1:p.Glu344Ter
  • NP_001392657.1:p.Glu344Ter
  • NP_001392658.1:p.Glu265Ter
  • NP_001392659.1:p.Glu317Ter
  • NP_001392660.1:p.Glu165Ter
  • NP_060484.2:p.Glu496Ter
  • NP_075044.2:p.Glu496Ter
  • NC_000002.11:g.60688561C>A
Protein change:
E165*
Molecular consequence:
  • NM_001405732.1:c.630+856G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001405733.1:c.528+856G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001405734.1:c.474+856G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001405735.1:c.474+856G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001405736.1:c.372+856G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_138559.2:c.630+856G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001363864.1:c.1384G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001365609.1:c.1384G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405708.1:c.1486G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405709.1:c.1486G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405710.1:c.1486G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405711.1:c.1384G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405712.1:c.1384G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405713.1:c.1330G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405714.1:c.1330G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405715.1:c.1330G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405716.1:c.1330G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405717.1:c.1228G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405718.1:c.1228G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405719.1:c.1384G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405720.1:c.1153G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405721.1:c.1153G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405722.1:c.1330G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405723.1:c.1330G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405724.1:c.1228G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405725.1:c.1030G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405726.1:c.1030G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405727.1:c.1030G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405728.1:c.1030G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405729.1:c.793G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405730.1:c.949G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001405731.1:c.493G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_018014.4:c.1486G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_022893.4:c.1486G>T - nonsense - [Sequence Ontology: SO:0001587]
Observations:
1

Condition(s)

Name:
Dias-Logan syndrome
Synonyms:
INTELLECTUAL DEVELOPMENTAL DISORDER WITH HEREDITARY PERSISTENCE OF FETAL HEMOGLOBIN; Intellectual developmental disorder with persistence of fetal hemoglobin
Identifiers:
MONDO: MONDO:0014914; MedGen: C4310833; OMIM: 617101

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004009567Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenicde novoclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India, SCV004009567.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Sep 1, 2024