NM_144573.4(NEXN):c.1666G>C (p.Glu556Gln) AND Cardiovascular phenotype

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 23, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003387404.2

Allele description [Variation Report for NM_144573.4(NEXN):c.1666G>C (p.Glu556Gln)]

NM_144573.4(NEXN):c.1666G>C (p.Glu556Gln)

Gene:
NEXN:nexilin F-actin binding protein [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p31.1
Genomic location:
Preferred name:
NM_144573.4(NEXN):c.1666G>C (p.Glu556Gln)
HGVS:
  • NC_000001.11:g.77942467G>C
  • NG_016625.1:g.58953G>C
  • NG_033243.2:g.41627C>G
  • NM_001172309.2:c.1474G>C
  • NM_144573.4:c.1666G>CMANE SELECT
  • NP_001165780.1:p.Glu492Gln
  • NP_653174.3:p.Glu556Gln
  • NP_653174.3:p.Glu556Gln
  • LRG_442t1:c.1666G>C
  • LRG_442:g.58953G>C
  • LRG_442p1:p.Glu556Gln
  • LRG_995:g.41627C>G
  • NC_000001.10:g.78408152G>C
  • NM_144573.3:c.1666G>C
Protein change:
E492Q
Molecular consequence:
  • NM_001172309.2:c.1474G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_144573.4:c.1666G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004098558Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jul 23, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004098558.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.E556Q variant (also known as c.1666G>C), located in coding exon 12 of the NEXN gene, results from a G to C substitution at nucleotide position 1666. The glutamic acid at codon 556 is replaced by glutamine, an amino acid with highly similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024