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NM_145200.5(CABP4):c.625C>T (p.Arg209Ter) AND Cone-rod synaptic disorder, congenital nonprogressive

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Aug 2, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003387538.1

Allele description [Variation Report for NM_145200.5(CABP4):c.625C>T (p.Arg209Ter)]

NM_145200.5(CABP4):c.625C>T (p.Arg209Ter)

Gene:
CABP4:calcium binding protein 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q13.2
Genomic location:
Preferred name:
NM_145200.5(CABP4):c.625C>T (p.Arg209Ter)
HGVS:
  • NC_000011.10:g.67457656C>T
  • NG_021211.1:g.7310C>T
  • NM_001300895.3:c.310C>T
  • NM_001300896.3:c.310C>T
  • NM_001379183.1:c.310C>T
  • NM_145200.4:c.625C>T
  • NM_145200.5:c.625C>TMANE SELECT
  • NP_001287824.1:p.Arg104Ter
  • NP_001287825.1:p.Arg104Ter
  • NP_001366112.1:p.Arg104Ter
  • NP_660201.1:p.Arg209Ter
  • NC_000011.9:g.67225127C>T
  • NR_166529.1:n.520C>T
Protein change:
R104*
Links:
dbSNP: rs779788706
NCBI 1000 Genomes Browser:
rs779788706
Molecular consequence:
  • NR_166529.1:n.520C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001300895.3:c.310C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001300896.3:c.310C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001379183.1:c.310C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_145200.5:c.625C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Cone-rod synaptic disorder, congenital nonprogressive
Synonyms:
NIGHT BLINDNESS, CONGENITAL STATIONARY, INCOMPLETE, AUTOSOMAL RECESSIVE; Congenital stationary night blindness, type 2B
Identifiers:
MONDO: MONDO:0012490; MedGen: C4041558; Orphanet: 215; OMIM: 610427

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004099008Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Aug 2, 2023) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center, SCV004099008.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

PVS1, PM2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024