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GRCh37/hg19 2q11.1-11.2(chr2:96732520-99142320)x3 AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 2, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003484071.1

Allele description [Variation Report for GRCh37/hg19 2q11.1-11.2(chr2:96732520-99142320)x3]

GRCh37/hg19 2q11.1-11.2(chr2:96732520-99142320)x3

Genes:
  • ARID5A:AT-rich interaction domain 5A [Gene - OMIM - HGNC]
  • ITPRIPL1:ITPRIP like 1 [Gene - HGNC]
  • KANSL3:KAT8 regulatory NSL complex subunit 3 [Gene - OMIM - HGNC]
  • STARD7:StAR related lipid transfer domain containing 7 [Gene - OMIM - HGNC]
  • ACTR1B:actin related protein 1B [Gene - OMIM - HGNC]
  • ADRA2B:adrenoceptor alpha 2B [Gene - OMIM - HGNC]
  • ANKRD23:ankyrin repeat domain 23 [Gene - OMIM - HGNC]
  • ANKRD36:ankyrin repeat domain 36 [Gene - OMIM - HGNC]
  • ANKRD36B:ankyrin repeat domain 36B [Gene - HGNC]
  • ANKRD39:ankyrin repeat domain 39 [Gene - HGNC]
  • ASTL:astacin like metalloendopeptidase [Gene - OMIM - HGNC]
  • CNGA3:cyclic nucleotide gated channel subunit alpha 3 [Gene - OMIM - HGNC]
  • CNNM3:cyclin and CBS domain divalent metal cation transport mediator 3 [Gene - OMIM - HGNC]
  • CNNM4:cyclin and CBS domain divalent metal cation transport mediator 4 [Gene - OMIM - HGNC]
  • COX5B:cytochrome c oxidase subunit 5B [Gene - OMIM - HGNC]
  • CIAO1:cytosolic iron-sulfur assembly component 1 [Gene - OMIM - HGNC]
  • DUSP2:dual specificity phosphatase 2 [Gene - OMIM - HGNC]
  • FAM178B:family with sequence similarity 178 member B [Gene - HGNC]
  • FER1L5:fer-1 like family member 5 [Gene - HGNC]
  • FAHD2B:fumarylacetoacetate hydrolase domain containing 2B [Gene - HGNC]
  • INPP4A:inositol polyphosphate-4-phosphatase type I A [Gene - OMIM - HGNC]
  • LMAN2L:lectin, mannose binding 2 like [Gene - OMIM - HGNC]
  • NCAPH:non-SMC condensin I complex subunit H [Gene - OMIM - HGNC]
  • SEMA4C:semaphorin 4C [Gene - OMIM - HGNC]
  • SNRNP200:small nuclear ribonucleoprotein U5 subunit 200 [Gene - OMIM - HGNC]
  • TMEM127:transmembrane protein 127 [Gene - OMIM - HGNC]
  • TMEM131:transmembrane protein 131 [Gene - OMIM - HGNC]
  • VWA3B:von Willebrand factor A domain containing 3B [Gene - OMIM - HGNC]
  • ZAP70:zeta chain of T cell receptor associated protein kinase 70 [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
2q11.1-11.2
Genomic location:
Chr2: 96732520 - 99142320 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 2q11.1-11.2(chr2:96732520-99142320)x3
HGVS:

    Condition(s)

    Synonyms:
    none provided
    Identifiers:
    MedGen: C3661900

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    Assertion and evidence details

    Help
    Submission AccessionSubmitterReview Status
    (Assertion method)    		Clinical Significance
    (Last evaluated)    		OriginMethodCitations
    SCV004230843Quest Diagnostics Nichols Institute San Juan Capistrano
    criteria provided, single submitter

    (ACMG/ClinGen CNV Guidelines, 2019)    		Uncertain significance
    (Mar 2, 2023)     		unknownclinical testing

    PubMed (1)
    [See all records that cite this PMID]

    Help

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

    Citations

    PubMed

    Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen).

    Riggs ER, Andersen EF, Cherry AM, Kantarci S, Kearney H, Patel A, Raca G, Ritter DI, South ST, Thorland EC, Pineda-Alvarez D, Aradhya S, Martin CL.

    Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6. Erratum in: Genet Med. 2021 Nov;23(11):2230. doi: 10.1038/s41436-021-01150-9.

    PubMed [citation]
    PMID:
    31690835
    PMCID:
    PMC7313390

    Details of each submission

    From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV004230843.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not providednot providednot providednot providedclinical testing PubMed (1)
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

    Last Updated: Feb 4, 2024