NM_198320.5(CPM):c.896A>G (p.Asn299Ser) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Feb 3, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004374501.1

Allele description [Variation Report for NM_198320.5(CPM):c.896A>G (p.Asn299Ser)]

NM_198320.5(CPM):c.896A>G (p.Asn299Ser)

Gene:

CPM:carboxypeptidase M [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12q15

Genomic location:

Preferred name:

NM_198320.5(CPM):c.896A>G (p.Asn299Ser)

HGVS:

NC_000012.12:g.68866940T>C
NM_001005502.3:c.896A>G
NM_001413387.1:c.932A>G
NM_001413388.1:c.896A>G
NM_001413389.1:c.896A>G
NM_001413390.1:c.896A>G
NM_001413391.1:c.896A>G
NM_001413392.1:c.773A>G
NM_001413393.1:c.787+2385A>G
NM_001413394.1:c.787+2385A>G
NM_001413395.1:c.653A>G
NM_001413396.1:c.653A>G
NM_001413397.1:c.533A>G
NM_001413398.1:c.533A>G
NM_001413399.1:c.533A>G
NM_001413400.1:c.533A>G
NM_001413401.1:c.533A>G
NM_001413402.1:c.896A>G
NM_001413403.1:c.329A>G
NM_001413404.1:c.329A>G
NM_001874.5:c.896A>G
NM_198320.5:c.896A>GMANE SELECT
NP_001005502.1:p.Asn299Ser
NP_001400316.1:p.Asn311Ser
NP_001400317.1:p.Asn299Ser
NP_001400318.1:p.Asn299Ser
NP_001400319.1:p.Asn299Ser
NP_001400320.1:p.Asn299Ser
NP_001400321.1:p.Asn258Ser
NP_001400324.1:p.Asn218Ser
NP_001400325.1:p.Asn218Ser
NP_001400326.1:p.Asn178Ser
NP_001400327.1:p.Asn178Ser
NP_001400328.1:p.Asn178Ser
NP_001400329.1:p.Asn178Ser
NP_001400330.1:p.Asn178Ser
NP_001400331.1:p.Asn299Ser
NP_001400332.1:p.Asn110Ser
NP_001400333.1:p.Asn110Ser
NP_001865.1:p.Asn299Ser
NP_938079.1:p.Asn299Ser
NC_000012.11:g.69260720T>C
NM_001874.4:c.896A>G
NR_182142.1:n.939A>G
NR_182143.1:n.1660A>G

Protein change:

N110S

Molecular consequence:

NM_001413393.1:c.787+2385A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001413394.1:c.787+2385A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001005502.3:c.896A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413387.1:c.932A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413388.1:c.896A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413389.1:c.896A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413390.1:c.896A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413391.1:c.896A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413392.1:c.773A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413395.1:c.653A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413396.1:c.653A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413397.1:c.533A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413398.1:c.533A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413399.1:c.533A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413400.1:c.533A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413401.1:c.533A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413402.1:c.896A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413403.1:c.329A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001413404.1:c.329A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001874.5:c.896A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_198320.5:c.896A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_182142.1:n.939A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_182143.1:n.1660A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004850675	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Feb 3, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004850675

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Feb 3, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004850675.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.896A>G (p.N299S) alteration is located in exon 7 (coding exon 6) of the CPM gene. This alteration results from a A to G substitution at nucleotide position 896, causing the asparagine (N) at amino acid position 299 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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