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NM_000268.4(NF2):c.34A>C (p.Ser12Arg) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 11, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004523210.1

Allele description [Variation Report for NM_000268.4(NF2):c.34A>C (p.Ser12Arg)]

NM_000268.4(NF2):c.34A>C (p.Ser12Arg)

Gene:
NF2:NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q12.2
Genomic location:
Preferred name:
NM_000268.4(NF2):c.34A>C (p.Ser12Arg)
HGVS:
  • NC_000022.11:g.29604032A>C
  • NG_009057.1:g.5477A>C
  • NG_201599.1:g.734A>C
  • NM_000268.4:c.34A>CMANE SELECT
  • NM_001407053.1:c.-197A>C
  • NM_001407054.1:c.34A>C
  • NM_001407055.1:c.34A>C
  • NM_001407056.1:c.-197A>C
  • NM_001407057.1:c.34A>C
  • NM_001407058.1:c.34A>C
  • NM_001407059.1:c.34A>C
  • NM_001407060.1:c.34A>C
  • NM_001407062.1:c.34A>C
  • NM_001407063.1:c.34A>C
  • NM_001407064.1:c.34A>C
  • NM_001407065.1:c.-607A>C
  • NM_001407066.1:c.34A>C
  • NM_001407067.1:c.-223A>C
  • NM_016418.5:c.34A>C
  • NM_181825.3:c.34A>C
  • NM_181828.3:c.34A>C
  • NM_181829.3:c.34A>C
  • NM_181830.3:c.34A>C
  • NM_181831.3:c.34A>C
  • NM_181832.3:c.34A>C
  • NM_181833.3:c.34A>C
  • NP_000259.1:p.Ser12Arg
  • NP_000259.1:p.Ser12Arg
  • NP_001393983.1:p.Ser12Arg
  • NP_001393984.1:p.Ser12Arg
  • NP_001393986.1:p.Ser12Arg
  • NP_001393987.1:p.Ser12Arg
  • NP_001393988.1:p.Ser12Arg
  • NP_001393989.1:p.Ser12Arg
  • NP_001393991.1:p.Ser12Arg
  • NP_001393992.1:p.Ser12Arg
  • NP_001393993.1:p.Ser12Arg
  • NP_001393995.1:p.Ser12Arg
  • NP_057502.2:p.Ser12Arg
  • NP_861546.1:p.Ser12Arg
  • NP_861966.1:p.Ser12Arg
  • NP_861967.1:p.Ser12Arg
  • NP_861968.1:p.Ser12Arg
  • NP_861969.1:p.Ser12Arg
  • NP_861970.1:p.Ser12Arg
  • NP_861971.1:p.Ser12Arg
  • LRG_511t1:c.34A>C
  • LRG_511t2:c.34A>C
  • LRG_511:g.5477A>C
  • LRG_511p1:p.Ser12Arg
  • LRG_511p2:p.Ser12Arg
  • NC_000022.10:g.30000021A>C
  • NM_000268.3:c.34A>C
  • NR_156186.2:n.400A>C
  • NR_176267.1:n.400A>C
Protein change:
S12R
Molecular consequence:
  • NM_001407053.1:c.-197A>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407056.1:c.-197A>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407065.1:c.-607A>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407067.1:c.-223A>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000268.4:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407054.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407055.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407057.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407058.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407059.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407060.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407062.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407063.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407064.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407066.1:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_016418.5:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181825.3:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181828.3:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181829.3:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181830.3:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181831.3:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181832.3:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181833.3:c.34A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NR_176267.1:n.400A>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005034030Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Mar 11, 2024) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005034030.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.S12R variant (also known as c.34A>C), located in coding exon 1 of the NF2 gene, results from an A to C substitution at nucleotide position 34. The serine at codon 12 is replaced by arginine, an amino acid with dissimilar properties. This amino acid position is highly conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Based on the available evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024