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NM_006912.6(RIT1):c.421C>T (p.Leu141=) AND Cardiovascular phenotype

Germline classification:
Likely benign (1 submission)
Last evaluated:
May 25, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004661708.1

Allele description [Variation Report for NM_006912.6(RIT1):c.421C>T (p.Leu141=)]

NM_006912.6(RIT1):c.421C>T (p.Leu141=)

Gene:
RIT1:Ras like without CAAX 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q22
Genomic location:
Preferred name:
NM_006912.6(RIT1):c.421C>T (p.Leu141=)
HGVS:
  • NC_000001.11:g.155904319G>A
  • NG_033885.1:g.12084C>T
  • NM_001256820.2:c.313C>T
  • NM_001256821.2:c.472C>T
  • NM_006912.4:c.421C>T
  • NM_006912.6:c.421C>TMANE SELECT
  • NP_001243749.1:p.Leu105=
  • NP_001243750.1:p.Leu158=
  • NP_008843.1:p.Leu141=
  • LRG_1372t1:c.421C>T
  • LRG_1372:g.12084C>T
  • LRG_1372p1:p.Leu141=
  • NC_000001.10:g.155874110G>A
Molecular consequence:
  • NM_001256820.2:c.313C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001256821.2:c.472C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_006912.6:c.421C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005159320Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(May 25, 2024) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005159320.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024