NM_004706.4(ARHGEF1):c.2249+7G>C AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jul 23, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004701843.1

Allele description [Variation Report for NM_004706.4(ARHGEF1):c.2249+7G>C]

NM_004706.4(ARHGEF1):c.2249+7G>C

Gene:

ARHGEF1:Rho guanine nucleotide exchange factor 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19q13.2

Genomic location:

Preferred name:

NM_004706.4(ARHGEF1):c.2249+7G>C

HGVS:

NC_000019.10:g.41905043G>C
NG_141466.1:g.775G>C
NM_001396000.1:c.2417+7G>C
NM_001396002.1:c.2150+7G>C
NM_001396003.1:c.2249+7G>C
NM_001396004.1:c.2150+7G>C
NM_001396006.1:c.2249+7G>C
NM_004706.4:c.2249+7G>CMANE SELECT
NM_198977.2:c.2150+7G>C
NM_199002.2:c.2294+7G>C
NC_000019.9:g.42409195G>C

Molecular consequence:

NM_001396000.1:c.2417+7G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001396002.1:c.2150+7G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001396003.1:c.2249+7G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001396004.1:c.2150+7G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001396006.1:c.2249+7G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_004706.4:c.2249+7G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_198977.2:c.2150+7G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_199002.2:c.2294+7G>C - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005202936	Women's Health and Genetics/Laboratory Corporation of America, LabCorp	criteria provided, single submitter (LabCorp Variant Classification Summary - May 2015)	Uncertain significance (Jul 23, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005202936

Women's Health and Genetics/Laboratory Corporation of America, LabCorp

criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)

Uncertain significance
(Jul 23, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV005202936.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Variant summary: ARHGEF1 c.2294+7G>C, also known as c.2249+7G>C in RefSeq transcript NM_004706, alters a non-conserved nucleotide located close to a canonical splice site and therefore could affect mRNA splicing, leading to a significantly altered protein sequence. Consensus agreement among computation tools predict no significant impact on normal splicing. However, these predictions have yet to be confirmed by functional studies. The variant allele was found at a frequency of 3.6e-05 in 250920 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. To our knowledge, no occurrence of c.2294+7G>C in individuals affected with Immunodeficiency 62 and no experimental evidence demonstrating its impact on protein function have been reported. ClinVar contains an entry for this variant (Variation ID: 2970695). Based on the evidence outlined above, the variant was classified as uncertain significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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