VCV000045280.8 - ClinVar

NM_005228.5(EGFR):c.2504A>T (p.His835Leu)

Germline

Classification

The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.

(3)

Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.

Conflicting classifications of pathogenicity
Likely pathogenic(1); Uncertain significance(2)

no assertion criteria provided

Somatic

No data submitted for somatic clinical impact

Somatic

No data submitted for oncogenicity

Variant Details

Identifiers

NM_005228.5(EGFR):c.2504A>T (p.His835Leu)

Variation ID: 45280 Accession: VCV000045280.8

Type and length

single nucleotide variant, 1 bp

Location

Cytogenetic: 7p11.2 7: 55191753 (GRCh38) [ NCBI UCSC ] 7: 55259446 (GRCh37) [ NCBI UCSC ]

Timeline in ClinVar

	First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.	Last submission Help The date of the most recent submission for each type of classification for this variant.	Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline	Jan 31, 2015	Apr 20, 2024	Jun 27, 2013

HGVS

Nucleotide	Protein	Molecular consequence
NM_005228.5:c.2504A>T MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.	NP_005219.2:p.His835Leu	missense
NM_001346897.2:c.2369A>T	NP_001333826.1:p.His790Leu	missense
NM_001346898.2:c.2504A>T	NP_001333827.1:p.His835Leu	missense
NM_001346899.2:c.2369A>T	NP_001333828.1:p.His790Leu	missense
NM_001346900.2:c.2345A>T	NP_001333829.1:p.His782Leu	missense
NM_001346941.2:c.1703A>T	NP_001333870.1:p.His568Leu	missense
NC_000007.14:g.55191753A>T
NC_000007.13:g.55259446A>T
NG_007726.3:g.177722A>T
LRG_304:g.177722A>T
LRG_304t1:c.2504A>T
	P00533:p.His835Leu

... more HGVS ... less HGVS

Protein change

H835L, H568L, H782L, H790L

Other names

Canonical SPDI

NC_000007.14:55191752:A:T

Functional consequence Help The effect of the variant on RNA or protein function, based on experimental evidence from submitters.

Global minor allele frequency (GMAF) Help The global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.

Allele frequency Help The frequency of the allele represented by this VCV record.

Links

ClinGen: CA135921 UniProtKB: P00533#VAR_069504 dbSNP: rs397517128 VarSome

Genes

Gene	OMIM	ClinGen Gene Dosage Sensitivity Curation		Variation Viewer Help Links to Variation Viewer, a genome browser to view variation data from NCBI databases.	Related variants
Gene	OMIM	HI score Help The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team.	TS score Help The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team.		Within gene Help The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants.	All Help The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene.
EGFR		No evidence available	No evidence available	GRCh38 GRCh37	2678	3032

Conditions - Germline

Condition Help The condition for this variant-condition (RCV) record in ClinVar.	Classification Help The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions)	Review status Help The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status.	Last evaluated Help The most recent date that a submitter evaluated this variant for the condition.	Variation/condition record Help The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page.
not specified	Uncertain significance (1)	no assertion criteria provided	Jun 20, 2008	RCV000038436.5
Lung carcinoma	Uncertain significance (1)	no assertion criteria provided	Jun 27, 2013	RCV000206918.1
Lung adenocarcinoma	Likely pathogenic (1)	no assertion criteria provided	-	RCV003996409.1

Submissions - Germline

Classification Help The submitted germline classification for each SCV record. (Last evaluated)	Review status Help Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria)	Condition Help The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant.	Submitter Help The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar.	More information Help This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter.
Uncertain significance (Jun 20, 2008)	no assertion criteria provided Method: clinical testing	Not Specified Affected status: not provided Allele origin: somatic	Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine Accession: SCV000062108.2 First in ClinVar: May 03, 2013 Last updated: Jan 31, 2015	Publications: PubMed (2) PubMed: 17236554‚ 15788655 Number of individuals with the variant: 1
Likely pathogenic (-)	no assertion criteria provided Method: clinical testing	Adenocarcinoma of lung Affected status: yes Allele origin: somatic	Key Laboratory of Carcinogenesis and Cancer Invasion, Central South University Accession: SCV004042722.1 First in ClinVar: Apr 20, 2024 Last updated: Apr 20, 2024
Uncertain significance (Jun 27, 2013)	no assertion criteria provided Method: literature only	Lung cancer Affected status: yes Allele origin: germline	ClinVar Staff, National Center for Biotechnology Information (NCBI) Accession: SCV000244017.1 First in ClinVar: Feb 02, 2016 Last updated: Feb 02, 2016	Publications: PubMed (1) PubMed: 15623594 Other databases http://web.expasy.org/variant_pa… http://web.expasy.org/variant_pages/VAR_069504.html

Germline Functional Evidence

There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for germline classification of this variant

Title	Author	Journal	Year	Link
[Epithelial growth factor receptor (EGFR) exon double-sequencing analysis in NSClC].	Lai RS	Zhonghua zhong liu za zhi [Chinese journal of oncology]	2006	PMID: 17236554
Mutations in the tyrosine kinase domain of the epidermal growth factor receptor in non-small cell lung cancer.	Yang SH	Clinical cancer research : an official journal of the American Association for Cancer Research	2005	PMID: 15788655
High frequency of epidermal growth factor receptor mutations with complex patterns in non-small cell lung cancers related to gefitinib responsiveness in Taiwan.	Huang SF	Clinical cancer research : an official journal of the American Association for Cancer Research	2004	PMID: 15623594
http://web.expasy.org/variant_pages/VAR_069504.html	-	-	-	-

Text-mined citations for rs397517128 ...

These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated May 19, 2024

ClinVar Genomic variation as it relates to human health

NM_005228.5(EGFR):c.2504A>T (p.His835Leu)

Variant Details

Genes

Conditions - Germline

Submissions - Germline

Germline Functional Evidence

Citations for germline classification of this variant

Text-mined citations for rs397517128 ...