ClinVar Genomic variation as it relates to human health
NM_000492.4(CFTR):c.1652G>A (p.Gly551Asp)
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_000492.4(CFTR):c.1652G>A (p.Gly551Asp)
Variation ID: 7120 Accession: VCV000007120.133
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 7q31.2 7: 117587806 (GRCh38) [ NCBI UCSC ] 7: 117227860 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Mar 24, 2015 Dec 28, 2024 Mar 3, 2004 - HGVS
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Nucleotide Protein Molecular
consequenceNM_000492.4:c.1652G>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_000483.3:p.Gly551Asp missense NC_000007.14:g.117587806G>A NC_000007.13:g.117227860G>A NG_016465.4:g.127023G>A NG_056131.3:g.761G>A LRG_663:g.127023G>A LRG_663t1:c.1652G>A LRG_663p1:p.Gly551Asp P13569:p.Gly551Asp - Protein change
- G551D
- Other names
- -
- Canonical SPDI
- NC_000007.14:117587805:G:A
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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Exome Aggregation Consortium (ExAC) 0.00014
The Genome Aggregation Database (gnomAD), exomes 0.00018
The Genome Aggregation Database (gnomAD) 0.00022
Trans-Omics for Precision Medicine (TOPMed) 0.00034
- Links
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PharmGKB Clinical Annotation: 981755803 ClinGen: CA340634 Genetic Testing Registry (GTR): GTR000074114 Genetic Testing Registry (GTR): GTR000257096 Genetic Testing Registry (GTR): GTR000500233 Genetic Testing Registry (GTR): GTR000556535 Genetic Testing Registry (GTR): GTR000576392 UniProtKB: P13569#VAR_000179 OMIM: 602421.0013 dbSNP: rs75527207 VarSome
Genes
Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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HI score
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The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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CFTR | - | - |
GRCh38 GRCh37 |
3927 | 5342 | |
LOC111674475 | - | - | - | GRCh38 | - | 150 |
Conditions - Germline
Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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Pathogenic (16) |
practice guideline
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Mar 3, 2004 | RCV000007540.48 | |
not provided (1) |
no classification provided
|
- | RCV000119040.13 | |
drug response (1) |
reviewed by expert panel
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Mar 24, 2021 | RCV000211289.13 | |
Pathogenic (8) |
criteria provided, multiple submitters, no conflicts
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Jun 18, 2024 | RCV000301838.39 | |
Pathogenic (1) |
criteria provided, single submitter
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Mar 26, 2022 | RCV000763574.11 | |
Pathogenic (1) |
criteria provided, single submitter
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- | RCV001004467.9 | |
Pathogenic (3) |
no assertion criteria provided
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Sep 23, 2024 | RCV001831524.14 | |
Pathogenic (1) |
criteria provided, single submitter
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Mar 25, 2024 | RCV003473009.2 |
Submissions - Germline
Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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pathogenic
(Mar 03, 2004)
|
practice guideline
Method: curation
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Cystic fibrosis
(Autosomal recessive inheritance)
Affected status: unknown
Allele origin:
germline
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American College of Medical Genetics and Genomics (ACMG)
Study: The ACMG recommended carrier screening panel
Accession: SCV000071395.2 First in ClinVar: Jun 04, 2013 Last updated: Mar 24, 2015 |
Comment:
Converted during submission to Pathogenic.
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Pathogenic
(Mar 17, 2017)
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reviewed by expert panel
Method: research
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Cystic fibrosis
Affected status: yes
Allele origin:
germline
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CFTR2
Study: CFTR2
Accession: SCV000071501.4 First in ClinVar: Oct 18, 2013 Last updated: Dec 06, 2016 |
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drug response
Drug-variant association: Efficacy
(Mar 24, 2021)
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reviewed by expert panel
Method: curation
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ivacaftor response - Efficacy
Drug used for
Cystic Fibrosis
Affected status: yes
Allele origin:
germline
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PharmGKB
Accession: SCV000268395.4
First in ClinVar: May 22, 2016 Last updated: Dec 12, 2021
Comment:
Drug is not necessarily used to treat response condition
|
Comment:
PharmGKB Level of Evidence 1A: Level 1A clinical annotations describe variant-drug combinations that have variant-specific prescribing guidance available in a current clinical guideline annotation or … (more)
PharmGKB Level of Evidence 1A: Level 1A clinical annotations describe variant-drug combinations that have variant-specific prescribing guidance available in a current clinical guideline annotation or an FDA-approved drug label annotation. Annotations of drug labels or clinical guidelines must give prescribing guidance for specific variants (e.g. CYP2C9*3, HLA-B*57:01) or provide mapping from defined allele functions to diplotypes and phenotypes to be used as supporting evidence for a level 1A clinical annotation. Level 1A clinical annotations must also be supported by at least one publication in addition to a clinical guideline or drug label with variant-specific prescribing guidance. (less)
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Pathogenic
(Nov 05, 2018)
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criteria provided, single submitter
Method: clinical testing
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Not Provided
Affected status: yes
Allele origin:
germline
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GeneDx
Accession: SCV000329247.6
First in ClinVar: Dec 06, 2016 Last updated: Apr 17, 2019 |
Comment:
The G551D variant in the CFTR gene is a commonly reported pathogenic variant associated with classical cystic fibrosis and accounts for approximately 1.6% of pathogenic … (more)
The G551D variant in the CFTR gene is a commonly reported pathogenic variant associated with classical cystic fibrosis and accounts for approximately 1.6% of pathogenic variants reported in the CFTR gene (Kerem et al., 1990; Moskowitz et al., 2008). Consistent with the increased carrier frequency for cystic fibrosis among Caucasian populations (Moskowitz et al., 2008), the NHLBI Exome Sequencing Project reports G551D was observed with a frequency of 0.21% (18/8600) alleles in individuals of European American background; no homozygotes were observed in this cohort. The G551D variant is a non-conservative amino acid substitution, which occurs at a position that is conserved across species. Functional studies indicate that G551D results in markedly impaired chloride transport activity, suggesting that G551D results in loss of CFTR chloride channel function ( Jovov et al., 1995). We interpret G551D as a pathogenic variant. (less)
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Pathogenic
(Feb 29, 2016)
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criteria provided, single submitter
Method: clinical testing
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Cystic fibrosis
(Autosomal recessive inheritance)
Affected status: not provided
Allele origin:
germline
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Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
Accession: SCV000711289.1
First in ClinVar: Apr 09, 2018 Last updated: Apr 09, 2018 |
Comment:
The p.Gly551Asp variant in CFTR has been reported in more than 500 individuals w ith CFTR-related disorders, including cystic fibrosis, congenital bilateral abse nce of … (more)
The p.Gly551Asp variant in CFTR has been reported in more than 500 individuals w ith CFTR-related disorders, including cystic fibrosis, congenital bilateral abse nce of vas deferens, and chronic pancreatitis (Cutting 1990, Kerem 1990, Mocanu 2010, Sosnay 2013, Muthuswany 2014). This variant has been identified in 0.03% ( 17/66338) of European chromosomes by the Exome Aggregation Consortium (ExAC, htt p://exac.broadinstitute.org; dbSNP rs75527207). Although this variant has been s een in the general population, its frequency is low enough to be consistent with a recessive carrier frequency. In vitro functional studies provide some evidenc e that the p.Gly551Asp variant may impact protein function (Teng 2012). In summa ry, this variant meets our criteria to be classified as pathogenic for CFTR-rela ted disorders based upon case data and functional evidence. (less)
Number of individuals with the variant: 2
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Pathogenic
(Jan 29, 2018)
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criteria provided, single submitter
Method: curation
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cystic fibrosis
Affected status: yes
Allele origin:
germline
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CFTR-France
Accession: SCV001169409.1
First in ClinVar: Mar 16, 2020 Last updated: Mar 16, 2020 |
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Pathogenic
(Oct 18, 2019)
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criteria provided, single submitter
Method: clinical testing
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Cystic fibrosis
Affected status: unknown
Allele origin:
unknown
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Myriad Genetics, Inc.
Accession: SCV001194226.2
First in ClinVar: Apr 06, 2020 Last updated: Jul 06, 2020 |
Comment:
NM_000492.3(CFTR):c.1652G>A(G551D) is classified as pathogenic in the context of cystic fibrosis. G551D is a classic cystic fibrosis variant. Sources cited for classification include the following: … (more)
NM_000492.3(CFTR):c.1652G>A(G551D) is classified as pathogenic in the context of cystic fibrosis. G551D is a classic cystic fibrosis variant. Sources cited for classification include the following: PMID: 23974870. Classification of NM_000492.3(CFTR):c.1652G>A(G551D) is based on the following criteria: This is a well-established pathogenic variant in the literature that has been observed more frequently in patients with clinical diagnoses than in healthy populations. Please note: this variant was assessed in the context of healthy population screening. (less)
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Pathogenic
(Mar 26, 2022)
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criteria provided, single submitter
Method: clinical testing
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Hereditary pancreatitis
Bronchiectasis with or without elevated sweat chloride 1 Cystic fibrosis Congenital bilateral aplasia of vas deferens from CFTR mutation
Affected status: unknown
Allele origin:
unknown
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Fulgent Genetics, Fulgent Genetics
Accession: SCV000894413.2
First in ClinVar: Mar 31, 2019 Last updated: Dec 31, 2022 |
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Pathogenic
(Apr 26, 2023)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: unknown
Allele origin:
unknown
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Quest Diagnostics Nichols Institute San Juan Capistrano
Accession: SCV000888067.3
First in ClinVar: Mar 13, 2019 Last updated: Jan 06, 2024 |
Comment:
This variant has been reported in compound heterozygous individuals affected with cystic fibrosis in the published literature (PMID: 23974870 (2013), 19734299 (2009), 18456578 (2008), 9401006 … (more)
This variant has been reported in compound heterozygous individuals affected with cystic fibrosis in the published literature (PMID: 23974870 (2013), 19734299 (2009), 18456578 (2008), 9401006 (1997), 7545856 (1995), 2236053 (1990)). This variant is also associated with chronic pancreatitis and asthma (PMID: 24440239 (2014), 22324837 (2012)). Additionally, multiple studies have shown a damaging effect of this variant on CFTR protein function (PMID: 29805046 (2018), 23891399 (2014), 22293084 (2012), 18167357 (2008), 8605891 (1996)). Therefore, the variant is classified as pathogenic. (less)
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Pathogenic
(Oct 27, 2023)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: unknown
Allele origin:
germline
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ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
Accession: SCV000603048.7
First in ClinVar: Sep 30, 2017 Last updated: Feb 20, 2024 |
Comment:
The CFTR p.Gly551Asp (G551D) variant is the third-most common pathogenic CFTR variant that has been reported (Sosnay 2013, CFTR2 database). It is associated with pancreatic … (more)
The CFTR p.Gly551Asp (G551D) variant is the third-most common pathogenic CFTR variant that has been reported (Sosnay 2013, CFTR2 database). It is associated with pancreatic insufficient forms of cystic fibrosis (Cutting 1990, Kerem 1990), with the variant protein showing defects in chloride transport (Sosnay 2013). This variant is considered to cause cystic fibrosis when identified with another pathogenic variant on the opposite chromosome. References: CFTR2 database: http://cftr2.org/ Cutting G et al. A cluster of cystic fibrosis mutations in the first nucleotide-binding fold of the cystic fibrosis conductance regulator protein. Nature. 1990; 346(6282):366-9. Kerem B et al. Identification of mutations in regions corresponding to the two putative nucleotide (ATP)-binding folds of the cystic fibrosis gene. Proc Natl Acad Sci U S A. 1990; 87(21):8447-51. Sosnay PR et al. Defining the disease liability of variants in the cystic fibrosis transmembrane conductance regulator gene. Nat Genet. 2013; 45(10):1160-7. (less)
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Pathogenic
(Jan 31, 2024)
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criteria provided, single submitter
Method: clinical testing
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Cystic fibrosis
Affected status: unknown
Allele origin:
germline
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Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV000074402.12
First in ClinVar: Jul 03, 2013 Last updated: Feb 28, 2024 |
Comment:
This sequence change replaces glycine, which is neutral and non-polar, with aspartic acid, which is acidic and polar, at codon 551 of the CFTR protein … (more)
This sequence change replaces glycine, which is neutral and non-polar, with aspartic acid, which is acidic and polar, at codon 551 of the CFTR protein (p.Gly551Asp). This variant is present in population databases (rs75527207, gnomAD 0.04%). This missense change has been observed in individual(s) with cystic fibrosis (PMID: 1379413, 1695717, 2236053, 19734299, 22658665, 23974870, 24066763). In at least one individual the data is consistent with being in trans (on the opposite chromosome) from a pathogenic variant. ClinVar contains an entry for this variant (Variation ID: 7120). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt CFTR protein function with a positive predictive value of 80%. Experimental studies have shown that this missense change affects CFTR function (PMID: 7493947, 7542778, 8605891). For these reasons, this variant has been classified as Pathogenic. (less)
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Pathogenic
(Sep 28, 2023)
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criteria provided, single submitter
Method: clinical testing
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Cystic fibrosis
Affected status: unknown
Allele origin:
germline
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Ambry Genetics
Accession: SCV001173064.4
First in ClinVar: Mar 16, 2020 Last updated: May 01, 2024 |
Comment:
The c.1652G>A (p.G551D) alteration is located in exon 12 (coding exon 12) of the CFTR gene. This alteration results from a G to A substitution … (more)
The c.1652G>A (p.G551D) alteration is located in exon 12 (coding exon 12) of the CFTR gene. This alteration results from a G to A substitution at nucleotide position 1652, causing the glycine (G) at amino acid position 551 to be replaced by an aspartic acid (D). Based on data from gnomAD, the A allele has an overall frequency of 0.018% (51/282242) total alleles studied. The highest observed frequency was 0.04% (51/128786) of European (non-Finnish) alleles. This alteration was first reported in Caucasian individuals with pulmonary disease and pancreatic insufficiency (Cutting, 1990). Individuals compound heterozygous for this mutation and another pathogenic CFTR mutation, or homozygous individuals, exhibit clinical features of cystic fibrosis including, but not limited to: elevated sweat chloride levels, pulmonary disease, and pancreatic insufficiency (Parad, 1996; Sosnay, 2013). This amino acid position is highly conserved in available vertebrate species. This alteration has been shown to decrease chloride channel activity compared to wild-type CFTR (Bompadre, 2007; Raraigh, 2018). This alteration is predicted to be deleterious by in silico analysis. Based on the available evidence, this alteration is classified as pathogenic. (less)
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Pathogenic
(Jun 18, 2024)
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criteria provided, single submitter
Method: clinical testing
|
Not provided
Affected status: unknown
Allele origin:
germline
|
Mayo Clinic Laboratories, Mayo Clinic
Accession: SCV001713427.4
First in ClinVar: Jun 15, 2021 Last updated: Dec 28, 2024 |
|
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Pathogenic
(Feb 10, 2015)
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criteria provided, single submitter
Method: research
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Cystic fibrosis
Affected status: unknown
Allele origin:
unknown,
maternal
|
HudsonAlpha Institute for Biotechnology, HudsonAlpha Institute for Biotechnology
Study: CSER-HudsonAlpha
Accession: SCV000584081.1 First in ClinVar: Dec 06, 2016 Last updated: Dec 06, 2016 |
Observation 1:
Number of individuals with the variant: 1
Observation 2:
Number of individuals with the variant: 1
Observation 3:
Number of individuals with the variant: 1
|
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Pathogenic
(Dec 03, 2015)
|
criteria provided, single submitter
Method: clinical testing
|
not provided
Affected status: unknown
Allele origin:
germline
|
Eurofins Ntd Llc (ga)
Accession: SCV000330923.4
First in ClinVar: Dec 06, 2016 Last updated: Dec 15, 2018 |
Number of individuals with the variant: 11
Zygosity: Single Heterozygote
Sex: mixed
|
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Pathogenic
(-)
|
criteria provided, single submitter
Method: clinical testing
|
Congenital bilateral aplasia of vas deferens from CFTR mutation
Cystic fibrosis
Affected status: unknown
Allele origin:
germline
|
Baylor Genetics
Accession: SCV001163512.1
First in ClinVar: Mar 01, 2020 Last updated: Mar 01, 2020 |
|
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Pathogenic
(Sep 06, 2019)
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criteria provided, single submitter
Method: clinical testing
|
Cystic fibrosis
Affected status: unknown
Allele origin:
germline
|
Genome Diagnostics Laboratory, The Hospital for Sick Children
Accession: SCV002507340.1
First in ClinVar: May 16, 2022 Last updated: May 16, 2022 |
|
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Pathogenic
(Sep 05, 2022)
|
criteria provided, single submitter
Method: curation
|
Cystic fibrosis
Affected status: yes
Allele origin:
unknown
|
Institute of Human Genetics, University of Leipzig Medical Center
Accession: SCV002573945.1
First in ClinVar: Sep 24, 2022 Last updated: Sep 24, 2022 |
Comment:
This variant was identified in 1 patient with a clinically confirmed diagnosis of cystic fibrosis. The variant was classified in the context of a project … (more)
This variant was identified in 1 patient with a clinically confirmed diagnosis of cystic fibrosis. The variant was classified in the context of a project re-classifying variants in the German Cystic Fibrosis Registry (Muko.e.V.). Link: https://www.muko.info/angebote/qualitaetsmanagement/register/cf-einrichtungen/mukoweb. Criteria applied: PS3, PM2_SUP, PM3_STR, PM5, PP3, PP4 (less)
Number of individuals with the variant: 1
|
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Pathogenic
(Jun 09, 2022)
|
criteria provided, single submitter
Method: clinical testing
|
Cystic fibrosis
Affected status: yes
Allele origin:
germline
|
MGZ Medical Genetics Center
Accession: SCV002580125.1
First in ClinVar: Oct 15, 2022 Last updated: Oct 15, 2022
Comment:
ACMG criteria applied: PM3_VSTR, PS3, PS4, PM2_SUP, PP1, PP3
|
Number of individuals with the variant: 1
Sex: female
|
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Pathogenic
(Nov 05, 2018)
|
criteria provided, single submitter
Method: clinical testing
|
Cystic fibrosis
Affected status: yes
Allele origin:
unknown
|
Mendelics
Accession: SCV000886153.2
First in ClinVar: Oct 10, 2018 Last updated: Dec 11, 2022 |
|
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Pathogenic
(Aug 21, 2023)
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criteria provided, single submitter
Method: clinical testing
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Cystic fibrosis
Affected status: unknown
Allele origin:
unknown
|
Baylor Genetics
Accession: SCV004041226.1
First in ClinVar: Oct 07, 2023 Last updated: Oct 07, 2023 |
|
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Pathogenic
(Mar 25, 2024)
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criteria provided, single submitter
Method: clinical testing
|
Bronchiectasis with or without elevated sweat chloride 1
Affected status: unknown
Allele origin:
unknown
|
Baylor Genetics
Accession: SCV004211634.2
First in ClinVar: Dec 30, 2023 Last updated: Jun 17, 2024 |
|
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Pathogenic
(Apr 13, 2015)
|
no assertion criteria provided
Method: clinical testing
|
Cystic Fibrosis
Affected status: unknown
Allele origin:
germline
|
Women's Health and Genetics/Laboratory Corporation of America, LabCorp
Accession: SCV000052132.2
First in ClinVar: Apr 04, 2013 Last updated: Oct 11, 2015 |
|
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Pathogenic
(-)
|
no assertion criteria provided
Method: clinical testing
|
not provided
Affected status: yes
Allele origin:
germline
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Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+
Additional submitter:
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen
Study: VKGL Data-share Consensus
Accession: SCV001957467.1 First in ClinVar: Oct 02, 2021 Last updated: Oct 02, 2021 |
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Pathogenic
(-)
|
no assertion criteria provided
Method: clinical testing
|
not provided
Affected status: yes
Allele origin:
germline
|
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center
Additional submitter:
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen
Study: VKGL Data-share Consensus
Accession: SCV001964832.1 First in ClinVar: Oct 07, 2021 Last updated: Oct 07, 2021 |
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Pathogenic
(Feb 07, 2012)
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no assertion criteria provided
Method: literature only
|
CYSTIC FIBROSIS
Affected status: not provided
Allele origin:
germline
|
OMIM
Accession: SCV000027741.9
First in ClinVar: Apr 04, 2013 Last updated: Jun 09, 2024 |
Comment on evidence:
In 7 patients, including 2 sibs, with cystic fibrosis (CF; 219700), Cutting et al. (1990) detected a G-to-A change at nucleotide 1784 in exon 11 … (more)
In 7 patients, including 2 sibs, with cystic fibrosis (CF; 219700), Cutting et al. (1990) detected a G-to-A change at nucleotide 1784 in exon 11 of the CFTR gene that was responsible for substitution of aspartic acid for glycine at amino acid 551 (G551D). In 6 of these patients the delta-F508 mutation (602421.0001) was present on the other allele; 3 of these patients, aged 11 to 13 years, had mild lung disease with normal pulmonary function test results. In the seventh patient, with mild lung disease, the mutation on the other allele was unknown. Curtis et al. (1991) described this mutation in 2 sibs in homozygous state and in an unrelated adult who was a compound heterozygote for G551D and delta-I507 (602421.0002). All 3 showed clinically mild disease. The G551D mutation creates an MboI recognition site at codon 551 in the CFTR gene. Burger et al. (1991) suggested that heterozygosity for the G551D mutation is a causative factor in recurrent polyposis nasi (nasal polyps). Hamosh et al. (1992) stated that the gly551-to-asp mutation, which is within the first nucleotide-binding fold of the CFTR, is the third most common CF mutation, with a worldwide frequency of 3.1% among CF chromosomes. Regions with a high frequency correspond to areas with large populations of Celtic descent. To determine whether G551D confers a different phenotype than does delta-F508, Hamosh et al. (1992) studied 79 compound heterozygotes for the 2 mutations in comparison with age- and sex-matched delta-F508 homozygotes from 9 CF centers in Europe and North America. There was less meconium ileus among the compound heterozygotes but otherwise no statistically significant difference was found between the 2 groups. Clinical outcome (after survival of meconium ileus) was indistinguishable. Delaney et al. (1996) showed that mice carrying the human G551D mutation in the Cftr gene show cystic fibrosis pathology but have a reduced risk of fatal intestinal blockage compared with 'null' mutants, in keeping with the reduced incidence of meconium ileus in G551D patients. The G551D mutant mice showed greatly reduced CFTR-related chloride transport, displaying activity (equivalent to approximately 4% of wildtype Cftr) intermediate between that of 'null' mice and Cftr insertional mutants with residual activity. The authors stated that long-term survival of these animals should provide an excellent model for the study of cystic fibrosis. The G551D allele is associated characteristically with populations of Celtic descent and is seen at its highest prevalence in regions such as Ireland and Brittany. It is seen in diminishing frequencies as one moves to the southern and eastern portions of Europe. An initially puzzling phenomenon was the relatively high incidence of this mutation in the Czech Republic (3.8%). As pointed out by Bobadilla et al. (2002), however, population movements of the past provide an explanation. Accurso et al. (2010) reported the results of a 2-phase clinical trial using VX-770, a CFTR potentiator, in 39 adults with cystic fibrosis and at least 1 G551D allele. Subjects received 150 mg of VX-770 every 12 hours for 28 days in phase 2 of the study. All showed a change in the nasal potential difference from baseline of -3.5 mV (range, -8.3 to 0.5; P = 0.02 for the within-subject comparison; P = 0.13 vs placebo), and the median change in the level of sweat chloride was -59.5 mmol per liter (range, -66.0 to -19.0; P = 0.008 within-subject, P = 0.02 vs placebo). The median change from baseline in the percent of predicted forced expiratory volume in 1 second was 8.7% (range, 2.3 to 31.3; P = 0.008 within-subject, P = 0.56 vs placebo). The VX-770 was well tolerated. None of the subjects withdrew from the study. All severe adverse events resolved without the discontinuation of VX-770. Ramsey et al. (2011) conducted a randomized, double-blind, placebo-controlled trial to evaluate ivacaftor (VX-770) in subjects 12 years of age or older with cystic fibrosis and at least 1 G551D-CFTR mutation. Subjects were randomly assigned to receive 150 mg of the drug every 12 hours (84 subjects, of whom 83 received at least 1 dose) or placebo (83, of whom 78 received at least 1 dose) for 48 weeks. The primary end point was the estimated mean change from baseline through week 24 in the percent of forced expiratory volume in 1 second (FEV1). The change from baseline through week 24 in the percent of predicted FEV1 was greater by 10.6 percentage points in the ivacaftor group than in the placebo group (p less than 0.001). Effects on pulmonary function were noted by 2 weeks, and a significant treatment effect was maintained through week 48. Subjects receiving ivacaftor were 55% less likely to have pulmonary exacerbation than were patients receiving placebo, through week 48 (p less than 0.001). In addition, through week 48, subjects in the ivacaftor group scored 8.6 points higher than did subjects in the placebo group on the respiratory symptoms domain of the Cystic Fibrosis Questionnaire revised instrument (p less than 0.001). By 48 weeks, patients treated with ivacaftor had gained, on average, 2.7 kg more weight than had patients receiving placebo (p less than 0.001). The change from baseline through week 48 in the concentration of sweat chloride with ivacaftor as compared with placebo was -48.1 mmol per liter (p less than 0.001). The incidence of adverse events was similar with treatment and controls, with a lower proportion of serious adverse events with ivacaftor than with placebo (24% vs 42%). On January 31, 2012, the FDA approved Kalydeco, formerly VX-770 (ivacaftor), for use in cystic fibrosis patients with the G551D mutation, as reported by Ledford (2012). (less)
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Pathogenic
(-)
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no assertion criteria provided
Method: clinical testing
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not provided
Affected status: yes
Allele origin:
germline
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Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen
Study: VKGL Data-share Consensus
Accession: SCV001743930.3 First in ClinVar: Jul 07, 2021 Last updated: Sep 08, 2021 |
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Pathogenic
(Mar 17, 2017)
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no assertion criteria provided
Method: clinical testing
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CFTR-related disorders
Affected status: unknown
Allele origin:
germline
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Natera, Inc.
Accession: SCV002080636.1
First in ClinVar: Feb 13, 2022 Last updated: Feb 13, 2022 |
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Pathogenic
(Sep 06, 2019)
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no assertion criteria provided
Method: clinical testing
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CFTR-related disorders
Affected status: unknown
Allele origin:
germline
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Genome Diagnostics Laboratory, The Hospital for Sick Children
Accession: SCV002507424.1
First in ClinVar: May 16, 2022 Last updated: May 16, 2022 |
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Pathogenic
(Sep 23, 2024)
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no assertion criteria provided
Method: clinical testing
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CFTR-related condition
Affected status: unknown
Allele origin:
germline
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PreventionGenetics, part of Exact Sciences
Accession: SCV004118138.2
First in ClinVar: Nov 20, 2023 Last updated: Oct 08, 2024 |
Comment:
The CFTR c.1652G>A variant is predicted to result in the amino acid substitution p.Gly551Asp. This variant has been reported to be causative for cystic fibrosis … (more)
The CFTR c.1652G>A variant is predicted to result in the amino acid substitution p.Gly551Asp. This variant has been reported to be causative for cystic fibrosis with or without pancreatic insufficiency (Kerem et al. 1990. PubMed ID: 2236053; Ooi and Durie. 2012. PubMed ID: 22658665; https://www.ncbi.nlm.nih.gov/books/NBK1250/). Functional studies show this variant results in reduced CFTR-related chloride transport compared to control (Jovov et al. 1995. PubMed ID: 7493947; Fulmer et al. 1995. PubMed ID: 7542778; Delaney et al. 1996. PubMed ID: 8605891). This variant is reported in 0.040% of alleles in individuals of European (non-Finnish) descent in gnomAD. This variant is interpreted as pathogenic. (less)
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not provided
(-)
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no classification provided
Method: literature only
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Cystic fibrosis
Affected status: unknown
Allele origin:
unknown
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GeneReviews
Accession: SCV001622789.2
First in ClinVar: May 23, 2021 Last updated: Oct 01, 2022 |
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not provided
(-)
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no classification provided
Method: literature only
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Hereditary pancreatitis
Affected status: yes
Allele origin:
germline
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GeneReviews
Accession: SCV000153746.3
First in ClinVar: May 31, 2014 Last updated: Oct 01, 2022 |
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Germline Functional Evidence
There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
HelpTitle | Author | Journal | Year | Link |
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Precision medicine integrating whole-genome sequencing, comprehensive metabolomics, and advanced imaging. | Hou YC | Proceedings of the National Academy of Sciences of the United States of America | 2020 | PMID: 31980526 |
Pancreatitis Overview. | Adam MP | - | 2020 | PMID: 24624459 |
Sequencing as a first-line methodology for cystic fibrosis carrier screening. | Beauchamp KA | Genetics in medicine : official journal of the American College of Medical Genetics | 2019 | PMID: 31036917 |
Phenotypic spectrum of patients with cystic fibrosis and cystic fibrosis-related disease carrying p.Arg117His. | Keenan K | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2019 | PMID: 30279124 |
Functional Assays Are Essential for Interpretation of Missense Variants Associated with Variable Expressivity. | Raraigh KS | American journal of human genetics | 2018 | PMID: 29805046 |
Reproductive genetic carrier screening for cystic fibrosis, fragile X syndrome, and spinal muscular atrophy in Australia: outcomes of 12,000 tests. | Archibald AD | Genetics in medicine : official journal of the American College of Medical Genetics | 2018 | PMID: 29261177 |
Retrospective observational study of French patients with cystic fibrosis and a Gly551Asp-CFTR mutation after 1 and 2years of treatment with ivacaftor in a real-world setting. | Hubert D | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2018 | PMID: 28711222 |
Recovery of lung function following a pulmonary exacerbation in patients with cystic fibrosis and the G551D-CFTR mutation treated with ivacaftor. | Flume PA | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2018 | PMID: 28651844 |
Improvement in exercise duration, lung function and well-being in G551D-cystic fibrosis patients: a double-blind, placebo-controlled, randomized, cross-over study with ivacaftor treatment. | Edgeworth D | Clinical science (London, England : 1979) | 2017 | PMID: 28611235 |
CFTR-France, a national relational patient database for sharing genetic and phenotypic data associated with rare CFTR variants. | Claustres M | Human mutation | 2017 | PMID: 28603918 |
Correlation of sweat chloride and percent predicted FEV(1) in cystic fibrosis patients treated with ivacaftor. | Fidler MC | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2017 | PMID: 27773592 |
Bone demineralization is improved by ivacaftor in patients with cystic fibrosis carrying the p.Gly551Asp mutation. | Sermet-Gaudelus I | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2016 | PMID: 27745802 |
Acute administration of ivacaftor to people with cystic fibrosis and a G551D-CFTR mutation reveals smooth muscle abnormalities. | Adam RJ | JCI insight | 2016 | PMID: 27158673 |
Mechanosensitivity of wild-type and G551D cystic fibrosis transmembrane conductance regulator (CFTR) controls regulatory volume decrease in simple epithelia. | Xie C | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 2016 | PMID: 26683699 |
Effect of ivacaftor in patients with advanced cystic fibrosis and a G551D-CFTR mutation: Safety and efficacy in an expanded access program in the United States. | Taylor-Cousar J | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2016 | PMID: 25682022 |
Intestinal Current Measurements Detect Activation of Mutant CFTR in Patients with Cystic Fibrosis with the G551D Mutation Treated with Ivacaftor. | Graeber SY | American journal of respiratory and critical care medicine | 2015 | PMID: 26568242 |
Effect of ivacaftor treatment in patients with cystic fibrosis and the G551D-CFTR mutation: patient-reported outcomes in the STRIVE randomized, controlled trial. | Quittner A | Health and quality of life outcomes | 2015 | PMID: 26135562 |
Efficacy response in CF patients treated with ivacaftor: post-hoc analysis. | Konstan MW | Pediatric pulmonology | 2015 | PMID: 25755212 |
Ivacaftor improves appearance of sinus disease on computerised tomography in cystic fibrosis patients with G551D mutation. | Sheikh SI | Clinical otolaryngology : official journal of ENT-UK ; official journal of Netherlands Society for Oto-Rhino-Laryngology & Cervico-Facial Surgery | 2015 | PMID: 25145599 |
Computed tomography correlates with improvement with ivacaftor in cystic fibrosis patients with G551D mutation. | Sheikh SI | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2015 | PMID: 25049054 |
Long-term safety and efficacy of ivacaftor in patients with cystic fibrosis who have the Gly551Asp-CFTR mutation: a phase 3, open-label extension study (PERSIST). | McKone EF | The Lancet. Respiratory medicine | 2014 | PMID: 25311995 |
Improvement in bronchiectasis on CT imaging in a pediatric patient with cystic fibrosis on ivacaftor therapy. | Hayes D Jr | Respiration; international review of thoracic diseases | 2014 | PMID: 25171465 |
Cystic fibrosis transmembrane conductance regulator (CFTR) potentiators protect G551D but not ΔF508 CFTR from thermal instability. | Liu X | Biochemistry | 2014 | PMID: 25148434 |
Spectrum and distribution of CFTR gene mutations in asthma and chronic pancreatitis cases of North Indian population. | Muthuswamy S | Gene | 2014 | PMID: 24440239 |
The relative frequency of CFTR mutation classes in European patients with cystic fibrosis. | De Boeck K | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2014 | PMID: 24440181 |
Effect of ivacaftor on CFTR forms with missense mutations associated with defects in protein processing or function. | Van Goor F | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2014 | PMID: 23891399 |
Ivacaftor in severe cystic fibrosis lung disease and a G551D mutation. | Wood ME | Respirology case reports | 2013 | PMID: 25473543 |
Assessment of clinical response to ivacaftor with lung clearance index in cystic fibrosis patients with a G551D-CFTR mutation and preserved spirometry: a randomised controlled trial. | Davies J | The Lancet. Respiratory medicine | 2013 | PMID: 24461666 |
Ivacaftor in a G551D homozygote with cystic fibrosis. | Harrison MJ | The New England journal of medicine | 2013 | PMID: 24066763 |
Defining the disease liability of variants in the cystic fibrosis transmembrane conductance regulator gene. | Sosnay PR | Nature genetics | 2013 | PMID: 23974870 |
Effect of VX-770 (ivacaftor) and OAG on Ca2+ influx and CFTR activity in G551D and F508del-CFTR expressing cells. | Vachel L | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2013 | PMID: 23757361 |
Effects of ivacaftor on severely ill patients with cystic fibrosis carrying a G551D mutation. | Hebestreit H | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2013 | PMID: 23757359 |
The predictive potential of the sweat chloride test in cystic fibrosis patients with the G551D mutation. | Seliger VI | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2013 | PMID: 23628510 |
Efficacy and safety of ivacaftor in patients aged 6 to 11 years with cystic fibrosis with a G551D mutation. | Davies JC | American journal of respiratory and critical care medicine | 2013 | PMID: 23590265 |
The use of ivacaftor in an adult with severe lung disease due to cystic fibrosis (ΔF508/G551D). | Polenakovik HM | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2013 | PMID: 23313410 |
Cystic fibrosis transmembrane conductance regulator (CFTR) potentiator VX-770 (ivacaftor) opens the defective channel gate of mutant CFTR in a phosphorylation-dependent but ATP-independent manner. | Eckford PD | The Journal of biological chemistry | 2012 | PMID: 22942289 |
Proteomic identification of calumenin as a G551D-CFTR associated protein. | Teng L | PloS one | 2012 | PMID: 22768251 |
Cystic fibrosis transmembrane conductance regulator (CFTR) gene mutations in pancreatitis. | Ooi CY | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2012 | PMID: 22658665 |
Association of CFTR gene mutation with bronchial asthma and its severity in Indian children: a case-control study. | Awasthi S | Annals of human biology | 2012 | PMID: 22324837 |
Drug bests cystic-fibrosis mutation. | Ledford H | Nature | 2012 | PMID: 22318583 |
Ivacaftor potentiation of multiple CFTR channels with gating mutations. | Yu H | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2012 | PMID: 22293084 |
A CFTR potentiator in patients with cystic fibrosis and the G551D mutation. | Ramsey BW | The New England journal of medicine | 2011 | PMID: 22047557 |
CFTR allelic heterogeneity in Mexican patients with cystic fibrosis: implications for molecular screening. | Chávez-Saldaña M | Revista de investigacion clinica; organo del Hospital de Enfermedades de la Nutricion | 2010 | PMID: 21416780 |
Effect of VX-770 in persons with cystic fibrosis and the G551D-CFTR mutation. | Accurso FJ | The New England journal of medicine | 2010 | PMID: 21083385 |
All azoospermic males should be screened for cystic fibrosis mutations before intracytoplasmic sperm injection. | Mocanu E | Fertility and sterility | 2010 | PMID: 20381036 |
Rescue of CF airway epithelial cell function in vitro by a CFTR potentiator, VX-770. | Van Goor F | Proceedings of the National Academy of Sciences of the United States of America | 2009 | PMID: 19846789 |
Clinical and molecular characterization of S1118F-CFTR. | Penmatsa H | Pediatric pulmonology | 2009 | PMID: 19774621 |
Clinical phenotype of cystic fibrosis patients with the G551D mutation. | Comer DM | QJM : monthly journal of the Association of Physicians | 2009 | PMID: 19734299 |
Consensus on the use and interpretation of cystic fibrosis mutation analysis in clinical practice. | Castellani C | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2008 | PMID: 18456578 |
Mechanism of G551D-CFTR (cystic fibrosis transmembrane conductance regulator) potentiation by a high affinity ATP analog. | Bompadre SG | The Journal of biological chemistry | 2008 | PMID: 18167357 |
G551D and G1349D, two CF-associated mutations in the signature sequences of CFTR, exhibit distinct gating defects. | Bompadre SG | The Journal of general physiology | 2007 | PMID: 17353351 |
Cystic fibrosis population carrier screening: 2004 revision of American College of Medical Genetics mutation panel. | Watson MS | Genetics in medicine : official journal of the American College of Medical Genetics | 2004 | PMID: 15371902 |
Cystic fibrosis: a worldwide analysis of CFTR mutations--correlation with incidence data and application to screening. | Bobadilla JL | Human mutation | 2002 | PMID: 12007216 |
Heterogeneity for mutations in the CFTR gene and clinical correlations in patients with congenital absence of the vas deferens. | Casals T | Human reproduction (Oxford, England) | 2000 | PMID: 10875853 |
Study of mutant and polyvariant mutant CFTR genes in patients with congenital absence of the vas deferens. | Ravnik-Glavac M | Pflugers Archiv : European journal of physiology | 2000 | PMID: 10653141 |
Cystic fibrosis mutation frequencies in upstate New York. | Shrimpton AE | Human mutation | 1997 | PMID: 9401006 |
CFTR gene mutations in adults with disseminated bronchiectasis. | Girodon E | European journal of human genetics : EJHG | 1997 | PMID: 9272738 |
Prevalence of delta F508 cystic fibrosis carriers in The Netherlands: logistic regression on sex, age, region of residence and number of offspring. | de Vries HG | Human genetics | 1997 | PMID: 9003498 |
Heterogeneity of phenotype in two cystic fibrosis patients homozygous for the CFTR exon 11 mutation G551D. | Parad RB | Journal of medical genetics | 1996 | PMID: 8863168 |
Cystic fibrosis mice carrying the missense mutation G551D replicate human genotype-phenotype correlations. | Delaney SJ | The EMBO journal | 1996 | PMID: 8605891 |
Molecular and clinical findings in Austrian cystic fibrosis patients with mutations in exon 11 of the CFTR gene. | Greil I | Wiener klinische Wochenschrift | 1995 | PMID: 7545856 |
Two cystic fibrosis transmembrane conductance regulator mutations have different effects on both pulmonary phenotype and regulation of outwardly rectified chloride currents. | Fulmer SB | Proceedings of the National Academy of Sciences of the United States of America | 1995 | PMID: 7542778 |
Interaction between cystic fibrosis transmembrane conductance regulator and outwardly rectified chloride channels. | Jovov B | The Journal of biological chemistry | 1995 | PMID: 7493947 |
Cystic fibrosis patients bearing both the common missense mutation Gly----Asp at codon 551 and the delta F508 mutation are clinically indistinguishable from delta F508 homozygotes, except for decreased risk of meconium ileus. | Hamosh A | American journal of human genetics | 1992 | PMID: 1379413 |
Mutations and sequence variations detected in the cystic fibrosis transmembrane conductance regulator (CFTR) gene: a report from the Cystic Fibrosis Genetic Analysis Consortium. | Tsui LC | Human mutation | 1992 | PMID: 1284534 |
Association of less common cystic fibrosis mutations with a mild phenotype. | Curtis A | Journal of medical genetics | 1991 | PMID: 1999830 |
Severe deficiency of cystic fibrosis transmembrane conductance regulator messenger RNA carrying nonsense mutations R553X and W1316X in respiratory epithelial cells of patients with cystic fibrosis. | Hamosh A | The Journal of clinical investigation | 1991 | PMID: 1721624 |
Genetic influences in the formation of nasal polyps. | Bürger J | Lancet (London, England) | 1991 | PMID: 1678049 |
Identification of mutations in regions corresponding to the two putative nucleotide (ATP)-binding folds of the cystic fibrosis gene. | Kerem BS | Proceedings of the National Academy of Sciences of the United States of America | 1990 | PMID: 2236053 |
A cluster of cystic fibrosis mutations in the first nucleotide-binding fold of the cystic fibrosis conductance regulator protein. | Cutting GR | Nature | 1990 | PMID: 1695717 |
http://www.egl-eurofins.com/emvclass/emvclass.php?approved_symbol=CFTR | - | - | - | - |
https://cftr2.org | - | - | - | - |
https://www.pharmgkb.org/clinicalAnnotation/981755803 | - | - | - | - |
https://www.pharmgkb.org/variant/PA166157516 | - | - | - | - |
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Text-mined citations for rs75527207 ...
HelpRecord last updated Jan 13, 2025
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.