esv2656425
- Organism: Homo sapiens
- Study:estd198 (Chia et al. 2013)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Yes
- Clinical Assertions: No
- Region Size:7,614
- Publication(s):Chia et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 615 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 615 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 308 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2656425 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 66,057,435 | 66,065,048 |
| esv2656425 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 63,724,671 | 63,732,284 |
| esv2656425 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000018.8 | Chr18 | 61,875,651 | 61,883,264 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| essv5395469 | copy number loss | 2351 [45] | SNP array | SNP genotyping analysis | 1 | essv5395255, essv5395460 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv5395469 | Remapped | Perfect | NC_000018.10:g.(?_ 66057435)_(6606504 8_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 66,057,435 | 66,065,048 |
| essv5395469 | Remapped | Perfect | NC_000018.9:g.(?_6 3724671)_(63732284 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 63,724,671 | 63,732,284 |
| essv5395469 | Submitted genomic | NC_000018.8:g.(?_6 1875651)_(61883264 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 61,875,651 | 61,883,264 |
Validation Information
| Variant Call ID | Experiment ID | Sample ID | Method | Analysis | Result |
|---|---|---|---|---|---|
| essv5395469 | 2 | 2351 [45] | Karyotyping | Manual observation | Pass |