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dbVar

Database of genomic structural variation

esv3876132

Organism: Homo sapiens

Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:49,179

Publication(s):1000 Genomes Consortium Phase 3 Integrated SV

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 270 SVs from 36 studies. See in: genome view

Remapped(Score: Perfect):97,107,213-97,157,391

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3876132	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	97,107,713 (-500, +0)	97,156,891 (-0, +500)
esv3876132	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	97,650,943 (-500, +0)	97,700,121 (-0, +500)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv23855061	deletion	HG01124	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,869

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv23855061	Remapped	Perfect	NC_000015.10:g.(97 107213_97107713)_( 97156891_97157391) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,107,713 (-500, +0)	97,156,891 (-0, +500)
essv23855061	Submitted genomic		NC_000015.9:g.(976 50443_97650943)_(9 7700121_97700621)d el	GRCh37 (hg19)		NC_000015.9	Chr15	97,650,943 (-500, +0)	97,700,121 (-0, +500)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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