nsv1429750
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:11
- Description:MOTIF=[T],NS=[301],REF=[11.0],RL=[11],RPA=[10.
0,12.0],RU=[T],QUAL=[148334] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 103 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1429750 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 38,041,866 | 38,041,876 |
| nsv1429750 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 38,507,538 | 38,507,548 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv8720626 | short tandem repeat | (T) 12 | Sequencing | Genotyping |
| nssv8720627 | short tandem repeat | (T) 10 | Sequencing | Genotyping |
| nssv8720628 | short tandem repeat | (T) 11 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv8720626 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 38,041,866 | 38,041,876 |
| nssv8720627 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 38,041,866 | 38,041,876 |
| nssv8720628 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 38,041,866 | 38,041,876 |
| nssv8720626 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 38,507,538 | 38,507,548 | ||
| nssv8720627 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 38,507,538 | 38,507,548 | ||
| nssv8720628 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 38,507,538 | 38,507,548 |