nsv1501204
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10
- Description:MOTIF=[A],NS=[301],REF=[11.0],RL=[11],RPA=[9.0
,10.0],RU=[A],QUAL=[160267] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 101 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 119 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1501204 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 150,153,918 | 150,153,927 |
| nsv1501204 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 150,126,111 | 150,126,121 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv8856961 | short tandem repeat | (A) 10 | Sequencing | Genotyping |
| nssv8856962 | short tandem repeat | (A) 9 | Sequencing | Genotyping |
| nssv8856963 | short tandem repeat | (A) 11 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv8856961 | Remapped | Pass | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 150,153,918 | 150,153,927 |
| nssv8856962 | Remapped | Pass | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 150,153,918 | 150,153,927 |
| nssv8856963 | Remapped | Pass | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 150,153,918 | 150,153,927 |
| nssv8856961 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 150,126,111 | 150,126,121 | ||
| nssv8856962 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 150,126,111 | 150,126,121 | ||
| nssv8856963 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 150,126,111 | 150,126,121 |