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dbVar

Database of genomic structural variation

nsv1951896

Organism: Homo sapiens

Study:nstd128 (Mallick et al. 2016)
Variant Type:short tandem repeat
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:11

Description:MOTIF=[C],NS=[293],REF=[11.0],RL=[11],RPA=[10.
0,12.0,13.0,14.0],RU=[C],QUAL=[35451.6]
Publication(s):Mallick et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 129 SVs from 20 studies. See in: genome view

Remapped(Score: Perfect):32,678,267-32,678,277

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1951896	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	32,678,267	32,678,277
nsv1951896	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	33,169,173	33,169,183

Variant Call Information

Variant Call ID	Type	Repeat Motif	Method	Analysis
nssv10669897	short tandem repeat	(C) 12	Sequencing	Genotyping
nssv10669898	short tandem repeat	(C) 10	Sequencing	Genotyping
nssv10669899	short tandem repeat	(C) 13	Sequencing	Genotyping
nssv10669900	short tandem repeat	(C) 14	Sequencing	Genotyping
nssv10669901	short tandem repeat	(C) 11 (ref)	Sequencing	Genotyping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv10669897	Remapped	Perfect	GRCh38.p12	First Pass	NC_000019.10	Chr19	32,678,267	32,678,277
nssv10669898	Remapped	Perfect	GRCh38.p12	First Pass	NC_000019.10	Chr19	32,678,267	32,678,277
nssv10669899	Remapped	Perfect	GRCh38.p12	First Pass	NC_000019.10	Chr19	32,678,267	32,678,277
nssv10669900	Remapped	Perfect	GRCh38.p12	First Pass	NC_000019.10	Chr19	32,678,267	32,678,277
nssv10669901	Remapped	Perfect	GRCh38.p12	First Pass	NC_000019.10	Chr19	32,678,267	32,678,277
nssv10669897	Submitted genomic		GRCh37 (hg19)		NC_000019.9	Chr19	33,169,173	33,169,183
nssv10669898	Submitted genomic		GRCh37 (hg19)		NC_000019.9	Chr19	33,169,173	33,169,183
nssv10669899	Submitted genomic		GRCh37 (hg19)		NC_000019.9	Chr19	33,169,173	33,169,183
nssv10669900	Submitted genomic		GRCh37 (hg19)		NC_000019.9	Chr19	33,169,173	33,169,183
nssv10669901	Submitted genomic		GRCh37 (hg19)		NC_000019.9	Chr19	33,169,173	33,169,183

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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