nsv3159967
- Organism: Homo sapiens
- Study:nstd151 (Exome Aggregation Consortium CNVs)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13,021
- Description:qual score = 74
- Publication(s):Exome Aggregation Consortium CNVs
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 175 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 50 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 175 SVs from 36 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3159967 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 38,917,721 | 38,930,741 |
| nsv3159967 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_014040929.1 | Chr19|NW_0 14040929.1 | 327,393 | 340,413 |
| nsv3159967 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 39,408,361 | 39,421,381 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv14223592 | copy number loss | Sequencing | Read depth |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14223592 | Remapped | Perfect | NW_014040929.1:g.( ?_327393)_(340413_ ?)del | GRCh38.p12 | Second Pass | NW_014040929.1 | Chr19|NW_0 14040929.1 | 327,393 | 340,413 |
| nssv14223592 | Remapped | Perfect | NC_000019.10:g.(?_ 38917721)_(3893074 1_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 38,917,721 | 38,930,741 |
| nssv14223592 | Submitted genomic | NC_000019.9:g.(?_3 9408361)_(39421381 _?)del | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,408,361 | 39,421,381 |