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dbVar

Database of genomic structural variation

nsv4385524

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:23,871,703

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 15681 SVs from 71 studies. See in: genome view

Remapped(Score: Pass):2,782,100-26,653,802

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4385524	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000024.10	ChrY	2,782,100	26,653,802
nsv4385524	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000024.9	ChrY	2,650,141	28,799,949

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15646965	copy number gain	2-1189-003	SNP array	Genotyping	24
nssv15652081	copy number gain	2-1512-003	SNP array	Genotyping	19
nssv15665016	copy number gain	14AG908	SNP array	Genotyping	23

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15646965	Remapped	Pass	NC_000024.10:g.(?_ 2782100)_(26653802 _?)dup	GRCh38.p12	First Pass	NC_000024.10	ChrY	2,782,100	26,653,802
nssv15652081	Remapped	Pass	NC_000024.10:g.(?_ 2782100)_(26653802 _?)dup	GRCh38.p12	First Pass	NC_000024.10	ChrY	2,782,100	26,653,802
nssv15665016	Remapped	Pass	NC_000024.10:g.(?_ 2782100)_(26653802 _?)dup	GRCh38.p12	First Pass	NC_000024.10	ChrY	2,782,100	26,653,802
nssv15646965	Submitted genomic		NC_000024.9:g.(?_2 650141)_(28799949_ ?)dup	GRCh37 (hg19)		NC_000024.9	ChrY	2,650,141	28,799,949
nssv15652081	Submitted genomic		NC_000024.9:g.(?_2 650141)_(28799949_ ?)dup	GRCh37 (hg19)		NC_000024.9	ChrY	2,650,141	28,799,949
nssv15665016	Submitted genomic		NC_000024.9:g.(?_2 650141)_(28799949_ ?)dup	GRCh37 (hg19)		NC_000024.9	ChrY	2,650,141	28,799,949

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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