nsv4680907
- Organism: Homo sapiens
- Study:nstd189 (Perez-Palma et al. 2020)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:398,653
- Publication(s):Pérez-Palma et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1195 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 1195 SVs from 73 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4680907 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 108,882,962 | 109,281,614 |
| nsv4680907 | Submitted genomic | GRCh37.p13 | Primary Assembly | NC_000003.11 | Chr3 | 108,601,809 | 109,000,461 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16211153 | duplication | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16211153 | Remapped | Perfect | NC_000003.12:g.(?_ 108882962)_(109281 614_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 108,882,962 | 109,281,614 |
| nssv16211153 | Submitted genomic | NC_000003.11:g.(?_ 108601809)_(109000 461_?)dup | GRCh37.p13 | NC_000003.11 | Chr3 | 108,601,809 | 109,000,461 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16211153 | <0.001 |