nsv4763461
- Organism: Homo sapiens
- Study:nstd199 (Quan et al. 2021)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Quan et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 316 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 60 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 61 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 60 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 61 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 84 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 60 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 316 SVs from 64 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv4763461 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 195,788,563 | 195,788,563 |
nsv4763461 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_5 | Second Pass | NT_187689.1 | Chr3|NT_18 7689.1 | 158,397 | 158,397 |
nsv4763461 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_4 | Second Pass | NT_187688.1 | Chr3|NT_18 7688.1 | 6,173 | 6,173 |
nsv4763461 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_3 | Second Pass | NT_187678.1 | Chr3|NT_18 7678.1 | 6,173 | 6,173 |
nsv4763461 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_6 | Second Pass | NT_187690.1 | Chr3|NT_18 7690.1 | 6,173 | 6,173 |
nsv4763461 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_7 | Second Pass | NT_187691.1 | Chr3|NT_18 7691.1 | 6,173 | 6,173 |
nsv4763461 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187532.1 | Chr3|NT_18 7532.1 | 166,371 | 166,371 |
nsv4763461 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187649.1 | Chr3|NT_18 7649.1 | 6,173 | 6,173 |
nsv4763461 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 195,515,434 | 195,515,434 |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv16273386 | insertion | Sequencing | Split read mapping |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16273386 | Remapped | Perfect | NT_187678.1:g.6173 _6174ins52 | GRCh38.p12 | Second Pass | NT_187678.1 | Chr3|NT_18 7678.1 | 6,173 | 6,173 |
nssv16273386 | Remapped | Perfect | NT_187688.1:g.6173 _6174ins52 | GRCh38.p12 | Second Pass | NT_187688.1 | Chr3|NT_18 7688.1 | 6,173 | 6,173 |
nssv16273386 | Remapped | Perfect | NT_187690.1:g.6173 _6174ins52 | GRCh38.p12 | Second Pass | NT_187690.1 | Chr3|NT_18 7690.1 | 6,173 | 6,173 |
nssv16273386 | Remapped | Perfect | NT_187691.1:g.6173 _6174ins52 | GRCh38.p12 | Second Pass | NT_187691.1 | Chr3|NT_18 7691.1 | 6,173 | 6,173 |
nssv16273386 | Remapped | Perfect | NT_187689.1:g.1583 97_158398ins52 | GRCh38.p12 | Second Pass | NT_187689.1 | Chr3|NT_18 7689.1 | 158,397 | 158,397 |
nssv16273386 | Remapped | Perfect | NT_187649.1:g.6173 _6174ins52 | GRCh38.p12 | Second Pass | NT_187649.1 | Chr3|NT_18 7649.1 | 6,173 | 6,173 |
nssv16273386 | Remapped | Perfect | NT_187532.1:g.1663 71_166372ins52 | GRCh38.p12 | Second Pass | NT_187532.1 | Chr3|NT_18 7532.1 | 166,371 | 166,371 |
nssv16273386 | Remapped | Perfect | NC_000003.12:g.195 788563_195788564in s52 | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 195,788,563 | 195,788,563 |
nssv16273386 | Submitted genomic | NC_000003.11:g.195 515434_195515435in s52 | GRCh37 (hg19) | NC_000003.11 | Chr3 | 195,515,434 | 195,515,434 |