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dbVar

Database of genomic structural variation

nsv4794887

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:533,032

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1773 SVs from 82 studies. See in: genome view

Remapped(Score: Perfect):9,223,317-9,756,537

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4794887	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	9,223,421 (-104)	9,756,452 (-2, +85)
nsv4794887	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	9,223,533 (-104)	9,756,564 (-2, +85)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16394063	duplication	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16394063	Remapped	Perfect	NC_000005.10:g.(92 23317_?)_(9756450_ 9756537)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,223,421 (-104)	9,756,452 (-2, +85)
nssv16394063	Submitted genomic		NC_000005.9:g.(922 3429_?)_(9756562_9 756649)dup	GRCh37 (hg19)		NC_000005.9	Chr5	9,223,533 (-104)	9,756,564 (-2, +85)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16394063	<0.001	1	16834

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