nsv4899396
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,366
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 211 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 216 SVs from 34 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4899396 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 235,336,141 (-2, +132) | 235,340,506 (-106, +3) | ||
| nsv4899396 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 235,499,456 (-2, +132) | 235,503,821 (-106, +3) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16424855 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16424855 | Submitted genomic | NC_000001.11:g.(23 5336139_235336273) _(235340400_235340 509)del | GRCh38 (hg38) | NC_000001.11 | Chr1 | 235,336,141 (-2, +132) | 235,340,506 (-106, +3) | ||
| nssv16424855 | Remapped | Perfect | NC_000001.10:g.(23 5499454_235499588) _(235503715_235503 824)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 235,499,456 (-2, +132) | 235,503,821 (-106, +3) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16424855 | <0.001 | 1 | 29246 |