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dbVar

Database of genomic structural variation

nsv4910294

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1,036

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 150 SVs from 20 studies. See in: genome view

Submitted genomic200,566,940-200,567,978

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4910294	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000002.12	Chr2	200,566,942 (-2)	200,567,977 (-1, +1)
nsv4910294	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	201,431,665 (-2)	201,432,700 (-1, +1)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16439287	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16439287	Submitted genomic		NC_000002.12:g.(20 0566940_?)_(200567 976_200567978)del	GRCh38 (hg38)		NC_000002.12	Chr2	200,566,942 (-2)	200,567,977 (-1, +1)
nssv16439287	Remapped	Perfect	NC_000002.11:g.(20 1431663_?)_(201432 699_201432701)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	201,431,665 (-2)	201,432,700 (-1, +1)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16439287	<0.001	1	29246

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