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dbVar

Database of genomic structural variation

nsv4938675

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1,250

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 99 SVs from 17 studies. See in: genome view

Submitted genomic134,401,030-134,402,283

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4938675	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	134,401,032 (-2, +53)	134,402,281 (-73, +2)
nsv4938675	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	133,736,723 (-2, +53)	133,737,972 (-73, +2)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16472875	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16472875	Submitted genomic		NC_000005.10:g.(13 4401030_134401085) _(134402208_134402 283)del	GRCh38 (hg38)		NC_000005.10	Chr5	134,401,032 (-2, +53)	134,402,281 (-73, +2)
nssv16472875	Remapped	Perfect	NC_000005.9:g.(133 736721_133736776)_ (133737899_1337379 74)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	133,736,723 (-2, +53)	133,737,972 (-73, +2)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16472875	<0.001	1	29246

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