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dbVar

Database of genomic structural variation

nsv4938876

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,149

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 108 SVs from 21 studies. See in: genome view

Submitted genomic139,483,155-139,485,346

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4938876	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	139,483,170 (-15, +15)	139,485,318 (-33, +28)
nsv4938876	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	138,862,755 (-15, +15)	138,864,903 (-33, +28)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16471346	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16471346	Submitted genomic		NC_000005.10:g.(13 9483155_139483185) _(139485285_139485 346)del	GRCh38 (hg38)		NC_000005.10	Chr5	139,483,170 (-15, +15)	139,485,318 (-33, +28)
nssv16471346	Remapped	Perfect	NC_000005.9:g.(138 862740_138862770)_ (138864870_1388649 31)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	138,862,755 (-15, +15)	138,864,903 (-33, +28)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16471346	<0.001	2	29246

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