nsv4969160
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:161
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 266 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 247 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 54 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4969160 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000008.11 | Chr8 | 143,711,595 | 143,711,755 | ||
| nsv4969160 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000008.10 | Chr8 | 144,793,765 | 144,793,925 |
| nsv4969160 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003315923.1 | Chr8|NW_00 3315923.1 | 50,240 | 50,400 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16515837 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16515837 | Submitted genomic | NC_000008.11:g.143 711595_143711755du p | GRCh38 (hg38) | NC_000008.11 | Chr8 | 143,711,595 | 143,711,755 | ||
| nssv16515837 | Remapped | Perfect | NW_003315923.1:g.5 0240_50400dup | GRCh37.p13 | First Pass | NW_003315923.1 | Chr8|NW_00 3315923.1 | 50,240 | 50,400 |
| nssv16515837 | Remapped | Perfect | NC_000008.10:g.144 793765_144793925du p | GRCh37.p13 | Second Pass | NC_000008.10 | Chr8 | 144,793,765 | 144,793,925 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16515837 | <0.001 | 3 | 29246 |