nsv5040224
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:24,144,079
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 61222 SVs from 138 studies. See in: genome view
Overlapping variant regions from other studies: 61225 SVs from 138 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5040224 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000012.12 | Chr12 | 47,213,128 (+1) | 71,357,206 | ||
| nsv5040224 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000012.11 | Chr12 | 47,606,911 (+1) | 71,750,986 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16557026 | inversion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16557026 | Submitted genomic | NC_000012.12:g.(?_ 47213129)_71357206 inv | GRCh38 (hg38) | NC_000012.12 | Chr12 | 47,213,128 (+1) | 71,357,206 | ||
| nssv16557026 | Remapped | Perfect | NC_000012.11:g.(?_ 47606912)_71750986 inv | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 47,606,911 (+1) | 71,750,986 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16557026 | <0.001 | 1 | 29246 |