nsv5060343
- Organism: Homo sapiens
- Study:nstd203 (Borges-Monroy et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:17
- Publication(s):Borges-Monroy et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 132 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 134 SVs from 22 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5060343 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 110,175,003 | 110,175,019 | ||
nsv5060343 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 110,717,625 | 110,717,641 |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv16597640 | alu insertion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16597640 | Submitted genomic | NC_000001.11:g.110 175003_110175019in s228 | GRCh38 (hg38) | NC_000001.11 | Chr1 | 110,175,003 | 110,175,019 | ||
nssv16597640 | Remapped | Perfect | NC_000001.10:g.110 717625_110717641in s228 | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 110,717,625 | 110,717,641 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
Variant Call ID | Allele Frequency (AF) |
---|---|
nssv16597640 | 0.5 |