nsv5285145
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:930,000
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2428 SVs from 88 studies. See in: genome view
Overlapping variant regions from other studies: 2428 SVs from 88 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5285145 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000001.11 | Chr1 | 19,608,177 (-10, +9) | 20,538,176 (-5, +6) | ||
| nsv5285145 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 19,934,671 (-10, +9) | 20,864,669 (-5, +6) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16739847 | duplication | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16739847 | Submitted genomic | NC_000001.11:g.(19 608167_19608186)_( 20538171_20538182) dup | GRCh38.p13 | NC_000001.11 | Chr1 | 19,608,177 (-10, +9) | 20,538,176 (-5, +6) | ||
| nssv16739847 | Remapped | Perfect | NC_000001.10:g.(19 934661_19934680)_( 20864664_20864675) dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 19,934,671 (-10, +9) | 20,864,669 (-5, +6) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16739847 | <0.001 |