nsv5320541
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:7,198
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 96 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 96 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5320541 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000019.10 | Chr19 | 49,840,939 (-4, +3) | 49,848,136 (-4, +2) | ||
| nsv5320541 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 50,344,196 (-4, +3) | 50,351,393 (-4, +2) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16772676 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16772676 | Submitted genomic | NC_000019.10:g.(49 840935_49840942)_( 49848132_49848138) del | GRCh38.p13 | NC_000019.10 | Chr19 | 49,840,939 (-4, +3) | 49,848,136 (-4, +2) | ||
| nssv16772676 | Remapped | Perfect | NC_000019.9:g.(503 44192_50344199)_(5 0351389_50351395)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 50,344,196 (-4, +3) | 50,351,393 (-4, +2) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16772676 | <0.001 |