nsv5327857
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,195,128
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 5044 SVs from 92 studies. See in: genome view
Overlapping variant regions from other studies: 3646 SVs from 85 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5327857 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000010.11 | Chr10 | 113,528,269 (-10, +5) | 115,723,396 (-10, +9) | ||
| nsv5327857 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 115,288,028 (-10, +5) | 116,786,295 (-10, +9) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16742230 | inversion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16742230 | Submitted genomic | NC_000010.11:g.(11 3528259_113528274) _(115723386_115723 405)inv | GRCh38.p13 | NC_000010.11 | Chr10 | 113,528,269 (-10, +5) | 115,723,396 (-10, +9) | ||
| nssv16742230 | Remapped | Pass | NC_000010.10:g.(11 5288018_115288033) _(116786285_116786 304)inv | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 115,288,028 (-10, +5) | 116,786,295 (-10, +9) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16742230 | <0.001 |