nsv5341536
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 174 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 175 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 301 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 303 SVs from 47 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv5341536 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | First Pass | NT_187614.1 | Chr17|NT_1 87614.1 | 2,278,900 | 2,278,900 | + |
| nsv5341536 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | First Pass | NT_187614.1 | Chr17|NT_1 87614.1 | 2,280,164 | 2,280,164 | + |
| nsv5341536 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000017.10 | Chr17 | 36,399,835 | 36,399,835 | + | ||
| nsv5341536 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000017.10 | Chr17 | 36,401,099 | 36,401,099 | + |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16410292 | intrachromosomal translocation | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv16410292 | Remapped | Perfect | GRCh38.p12 | First Pass | NT_187614.1 | Chr17|NT_1 87614.1 | 2,278,900 | 2,278,900 | + |
| nssv16410292 | Remapped | Perfect | GRCh38.p12 | First Pass | NT_187614.1 | Chr17|NT_1 87614.1 | 2,280,164 | 2,280,164 | + |
| nssv16410292 | Submitted genomic | GRCh37 (hg19) | NC_000017.10 | Chr17 | 36,399,835 | 36,399,835 | + | ||
| nssv16410292 | Submitted genomic | GRCh37 (hg19) | NC_000017.10 | Chr17 | 36,401,099 | 36,401,099 | + |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16410292 | 0.292 | 4914 | 16834 |