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dbVar

Database of genomic structural variation

nsv5438498

Organism: Homo sapiens

Study:nstd206 (Byrska-Bishop et al. 2022)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:60

Publication(s):Byrska-Bishop et al. 2022

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 108 SVs from 19 studies. See in: genome view

Submitted genomic25,815,007-25,815,066

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5438498	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000002.12	Chr2	25,815,007	25,815,066
nsv5438498	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	26,037,876	26,037,935

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16911026	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16911026	Submitted genomic		NC_000002.12:g.258 15007_25815066del	GRCh38 (hg38)		NC_000002.12	Chr2	25,815,007	25,815,066
nssv16911026	Remapped	Perfect	NC_000002.11:g.260 37876_26037935del	GRCh37.p13	First Pass	NC_000002.11	Chr2	26,037,876	26,037,935

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16911026	<0.001	1	6404

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