nsv5443316
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13,301
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 157 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 157 SVs from 34 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5443316 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000002.12 | Chr2 | 25,783,921 (-50, +296) | 25,797,221 (-211, +49) | ||
| nsv5443316 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 26,006,790 (-50, +296) | 26,020,090 (-211, +49) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16911018 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16911018 | Submitted genomic | NC_000002.12:g.(25 783871_25784217)_( 25797010_25797270) del | GRCh38 (hg38) | NC_000002.12 | Chr2 | 25,783,921 (-50, +296) | 25,797,221 (-211, +49) | ||
| nssv16911018 | Remapped | Perfect | NC_000002.11:g.(26 006740_26007086)_( 26019879_26020139) del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 26,006,790 (-50, +296) | 26,020,090 (-211, +49) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16911018 | <0.001 | 1 | 6404 |