nsv5516562
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,127
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 81 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 81 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5516562 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000017.11 | Chr17 | 27,617,657 (-30, +352) | 27,619,783 (-334, +29) | ||
| nsv5516562 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 25,944,683 (-30, +352) | 25,946,809 (-334, +29) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17712300 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17712300 | Submitted genomic | NC_000017.11:g.(27 617627_27618009)_( 27619449_27619812) del | GRCh38 (hg38) | NC_000017.11 | Chr17 | 27,617,657 (-30, +352) | 27,619,783 (-334, +29) | ||
| nssv17712300 | Remapped | Perfect | NC_000017.10:g.(25 944653_25945035)_( 25946475_25946838) del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 25,944,683 (-30, +352) | 25,946,809 (-334, +29) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17712300 | <0.001 | 1 | 6404 |