nsv5532611
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:56
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 96 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 93 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 4 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5532611 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000019.10 | Chr19 | 41,436,138 | 41,436,193 | ||
| nsv5532611 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000019.9 | Chr19 | 41,942,043 | 41,942,098 |
| nsv5532611 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004775434.1 | Chr19|NW_0 04775434.1 | 5,177 | 5,232 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17723500 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17723500 | Submitted genomic | NC_000019.10:g.414 36138_41436193del | GRCh38 (hg38) | NC_000019.10 | Chr19 | 41,436,138 | 41,436,193 | ||
| nssv17723500 | Remapped | Perfect | NW_004775434.1:g.5 177_5232del | GRCh37.p13 | First Pass | NW_004775434.1 | Chr19|NW_0 04775434.1 | 5,177 | 5,232 |
| nssv17723500 | Remapped | Perfect | NC_000019.9:g.4194 2043_41942098del | GRCh37.p13 | Second Pass | NC_000019.9 | Chr19 | 41,942,043 | 41,942,098 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17723500 | <0.001 | 1 | 6404 |