nsv5558540
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:22,214
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 137 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 137 SVs from 32 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5558540 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000007.14 | Chr7 | 23,776,187 (-938, +680) | 23,798,400 (-517, +724) | ||
| nsv5558540 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 23,815,806 (-938, +680) | 23,838,019 (-517, +724) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16994545 | inversion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16994545 | Submitted genomic | NC_000007.14:g.(23 775249_23776867)_( 23797883_23799124) inv | GRCh38 (hg38) | NC_000007.14 | Chr7 | 23,776,187 (-938, +680) | 23,798,400 (-517, +724) | ||
| nssv16994545 | Remapped | Perfect | NC_000007.13:g.(23 814868_23816486)_( 23837502_23838743) inv | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 23,815,806 (-938, +680) | 23,838,019 (-517, +724) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16994545 | 0.292 | 1870 | 6404 |