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dbVar

Database of genomic structural variation

nsv5564235

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:668

Description:NC_000019.9:g.(?_48342557)_(48343224_?)dup AND multiple conditions
Publication(s):Kumaran et al. 2018

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 81 SVs from 27 studies. See in: genome view

Remapped(Score: Perfect):47,839,300-47,839,967

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv5564235	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	47,839,300	47,839,967
nsv5564235	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	48,342,557	48,343,224

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17970522	duplication	Multiple	Multiple	CONE-ROD DYSTROPHY 2; CORD2; Cone rod dystrophy; Cone-rod dystrophy 2; LEBER CONGENITAL AMAUROSIS 7; LCA7; Leber congenital amaurosis; Leber congenital amaurosis 7	Uncertain significance	ClinVar	RCV001916120.3, VCV001409884.3

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv17970522	Remapped	Perfect	NC_000019.10:g.(?_ 47839300)_(4783996 7_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	47,839,300	47,839,967
nssv17970522	Submitted genomic		NC_000019.9:g.(?_4 8342557)_(48343224 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	48,342,557	48,343,224

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17970522	GRCh37: NC_000019.9:g.(?_48342557)_(48343224_?)dup	duplication	germline	CONE-ROD DYSTROPHY 2; CORD2; Cone rod dystrophy; Cone-rod dystrophy 2; LEBER CONGENITAL AMAUROSIS 7; LCA7; Leber congenital amaurosis; Leber congenital amaurosis 7	Uncertain significance	ClinVar	RCV001916120.3, VCV001409884.3

No genotype data were submitted for this variant

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