nsv5668415
- Organism: Homo sapiens
- Study:nstd207 (Ebert et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:408
- Publication(s):Ebert et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 462 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 460 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 36 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5668415 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 150,583,541 | 150,583,948 | ||
| nsv5668415 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 149,752,001 | 149,752,408 |
| nsv5668415 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 6,107,939 | 6,108,346 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv17166067 | deletion | SAMN00006466 | Sequencing | Sequence alignment | 4,625 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17166067 | Submitted genomic | NC_000023.11:g.150 583541_150583948de lT | GRCh38 (hg38) | NC_000023.11 | ChrX | 150,583,541 | 150,583,948 | ||
| nssv17166067 | Remapped | Perfect | NW_004070890.2:g.6 107939_6108346delT | GRCh37.p13 | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 6,107,939 | 6,108,346 |
| nssv17166067 | Remapped | Perfect | NC_000023.10:g.149 752001_149752408de lT | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 149,752,001 | 149,752,408 |