nsv5690047
- Organism: Homo sapiens
- Study:nstd211 (Chuang et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a Alu mobile element relative to the reference
- Publication(s):Chuang et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 235 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 235 SVs from 37 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5690047 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000003.12 | Chr3 | 197,842,774 | 197,842,774 | ||
| nsv5690047 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 197,569,645 | 197,569,645 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17210166 | alu insertion | Sequencing | Other |
| nssv17215084 | alu insertion | Sequencing | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17210166 | Submitted genomic | NC_000003.12:g.197 842774_197842775in s280 | GRCh38 (hg38) | NC_000003.12 | Chr3 | 197,842,774 | 197,842,774 | ||
| nssv17215084 | Submitted genomic | NC_000003.12:g.197 842774_197842775in s279 | GRCh38 (hg38) | NC_000003.12 | Chr3 | 197,842,774 | 197,842,774 | ||
| nssv17210166 | Remapped | Perfect | NC_000003.11:g.197 569645_197569646in s280 | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 197,569,645 | 197,569,645 |
| nssv17215084 | Remapped | Perfect | NC_000003.11:g.197 569645_197569646in s279 | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 197,569,645 | 197,569,645 |