nsv5715000
- Organism: Homo sapiens
- Study:nstd211 (Chuang et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a Alu mobile element relative to the reference
- Publication(s):Chuang et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 397 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 397 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 10 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5715000 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 77,653,002 | 77,653,002 | ||
| nsv5715000 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 76,908,492 | 76,908,492 |
| nsv5715000 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871101.3 | ChrX|NW_00 3871101.3 | 210,264 | 210,264 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17204558 | alu insertion | Sequencing | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17204558 | Submitted genomic | NC_000023.11:g.776 53002_77653003ins2 79 | GRCh38 (hg38) | NC_000023.11 | ChrX | 77,653,002 | 77,653,002 | ||
| nssv17204558 | Remapped | Perfect | NW_003871101.3:g.2 10264_210265ins279 | GRCh37.p13 | First Pass | NW_003871101.3 | ChrX|NW_00 3871101.3 | 210,264 | 210,264 |
| nssv17204558 | Remapped | Perfect | NC_000023.10:g.769 08492_76908493ins2 79 | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 76,908,492 | 76,908,492 |