nsv5852271
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:12,039
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1879 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 1466 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 958 SVs from 43 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5852271 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000010.11 | Chr10 | 47,664,648 | 47,676,686 | ||
| nsv5852271 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000010.10 | Chr10 | 47,354,668 | 47,366,706 |
| nsv5852271 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,935,763 | 1,947,801 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17450162 | copy number variation | Sequencing | Sequence alignment | 4 |
| nssv17450666 | copy number variation | Sequencing | Sequence alignment | 0 |
| nssv17454432 | copy number variation | Sequencing | Sequence alignment | 3 |
| nssv17468395 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17450162 | Submitted genomic | GRCh38 (hg38) | NC_000010.11 | Chr10 | 47,664,648 | 47,676,686 | ||
| nssv17450666 | Submitted genomic | GRCh38 (hg38) | NC_000010.11 | Chr10 | 47,664,648 | 47,676,686 | ||
| nssv17454432 | Submitted genomic | GRCh38 (hg38) | NC_000010.11 | Chr10 | 47,664,648 | 47,676,686 | ||
| nssv17468395 | Submitted genomic | GRCh38 (hg38) | NC_000010.11 | Chr10 | 47,664,648 | 47,676,686 | ||
| nssv17450162 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,935,763 | 1,947,801 |
| nssv17450666 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,935,763 | 1,947,801 |
| nssv17454432 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,935,763 | 1,947,801 |
| nssv17468395 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,935,763 | 1,947,801 |
| nssv17450162 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 47,354,668 | 47,366,706 |
| nssv17450666 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 47,354,668 | 47,366,706 |
| nssv17454432 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 47,354,668 | 47,366,706 |
| nssv17468395 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 47,354,668 | 47,366,706 |