nsv5854328
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,600
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 149 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 147 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 32 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5854328 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000011.10 | Chr11 | 113,116,629 | 113,119,228 | ||
| nsv5854328 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000011.9 | Chr11 | 112,987,351 | 112,989,950 |
| nsv5854328 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871078.1 | Chr11|NW_0 03871078.1 | 299,355 | 301,954 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17460272 | copy number variation | Sequencing | Sequence alignment | 0 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17460272 | Submitted genomic | GRCh38 (hg38) | NC_000011.10 | Chr11 | 113,116,629 | 113,119,228 | ||
| nssv17460272 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871078.1 | Chr11|NW_0 03871078.1 | 299,355 | 301,954 |
| nssv17460272 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000011.9 | Chr11 | 112,987,351 | 112,989,950 |