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dbVar

Database of genomic structural variation

nsv5868159

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1,914,935

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2507 SVs from 78 studies. See in: genome view

Submitted genomic49,706,604-51,621,538

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5868159	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000023.11	ChrX	49,706,604	51,621,538
nsv5868159	Remapped	Good	GRCh37.p13	Primary Assembly	Second Pass	NC_000023.10	ChrX	49,471,207	51,364,390
nsv5868159	Remapped	Pass	GRCh37.p13	PATCHES	First Pass	NW_004070877.1	ChrX\|NW_00 4070877.1	1	1,334,653

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17469206	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17469206	Submitted genomic		NC_000023.11:g.497 06604_51621538del	GRCh38 (hg38)		NC_000023.11	ChrX	49,706,604	51,621,538
nssv17469206	Remapped	Pass	NW_004070877.1:g.1 _1334653del	GRCh37.p13	First Pass	NW_004070877.1	ChrX\|NW_00 4070877.1	1	1,334,653
nssv17469206	Remapped	Good	NC_000023.10:g.494 71207_51364390del	GRCh37.p13	Second Pass	NC_000023.10	ChrX	49,471,207	51,364,390

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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