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dbVar

Database of genomic structural variation

nsv5874684

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:3,303

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 402 SVs from 30 studies. See in: genome view

Submitted genomic77,590,236-77,593,538

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5874684	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000023.11	ChrX	77,590,236	77,593,538
nsv5874684	Remapped	Perfect	GRCh37.p13	Primary Assembly	Second Pass	NC_000023.10	ChrX	76,845,706	76,849,008
nsv5874684	Remapped	Perfect	GRCh37.p13	PATCHES	First Pass	NW_003871101.3	ChrX\|NW_00 3871101.3	147,498	150,800

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17467975	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17467975	Submitted genomic		NC_000023.11:g.775 90236_77593538del	GRCh38 (hg38)		NC_000023.11	ChrX	77,590,236	77,593,538
nssv17467975	Remapped	Perfect	NW_003871101.3:g.1 47498_150800del	GRCh37.p13	First Pass	NW_003871101.3	ChrX\|NW_00 3871101.3	147,498	150,800
nssv17467975	Remapped	Perfect	NC_000023.10:g.768 45706_76849008del	GRCh37.p13	Second Pass	NC_000023.10	ChrX	76,845,706	76,849,008

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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