nsv5887154
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,900
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 850 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 791 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 14 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5887154 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000022.11 | Chr22 | 19,288,610 | 19,290,509 | ||
| nsv5887154 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000022.10 | Chr22 | 19,276,133 | 19,278,032 |
| nsv5887154 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871096.1 | Chr22|NW_0 03871096.1 | 141,827 | 143,726 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17481478 | copy number variation | Sequencing | Sequence alignment | 2 |
| nssv17489481 | copy number variation | Sequencing | Sequence alignment | 0 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17481478 | Submitted genomic | GRCh38 (hg38) | NC_000022.11 | Chr22 | 19,288,610 | 19,290,509 | ||
| nssv17489481 | Submitted genomic | GRCh38 (hg38) | NC_000022.11 | Chr22 | 19,288,610 | 19,290,509 | ||
| nssv17481478 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871096.1 | Chr22|NW_0 03871096.1 | 141,827 | 143,726 |
| nssv17489481 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871096.1 | Chr22|NW_0 03871096.1 | 141,827 | 143,726 |
| nssv17481478 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000022.10 | Chr22 | 19,276,133 | 19,278,032 |
| nssv17489481 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000022.10 | Chr22 | 19,276,133 | 19,278,032 |